Interpolation in footnotes

[ReubenJ]

Use case: I'd like to combine footnotes from this package with ShortCodes.jl's DOI to do something like:

md"""
As discussed in [^article], we want to do something.
"""

and further down the document:

md"""
[^article]: $(DOI(...))
"""

Resulting in something like

As discussed in [1], we want to do something.

[1]

Buettner, Florian; Diamanti, Evangelia; Fisher, Jasmin; Göttgens, Berthold; Haghverdi, Laleh; Jawaid, Wajid; Kouskoff, Valerie; Lilly, Andrew J; Macaulay, Iain; Moignard, Victoria; Nishikawa, Shin-Ichi; Piterman, Nir; Tanaka, Yosuke; Theis, Fabian; Wilkinson, Adam C; Woodhouse, Steven Decoding The Regulatory Network Of Early Blood Development From Single-Cell Gene Expression Measurements, Nature Biotechnology (2015) 10/f64rrc, cited by 337

It currently doesn't interpolate the DOI object (or any expression within the text) and looks something like this:

As discussed in [1], we want to do something.

[1] :(DOI("10.1038/nbt.3154"))

I guess it has something to do with the way the inner text is just taken verbatim here, and something would need to change there.

[eford]

That seems like a nice feature suggestion. Unfortunately, I'm not competent at JavaScript. I'd suggest that we ask some of the folks who contributed to https://github.com/JuliaPluto/PlutoUI.jl/issues/44 if they might be interested in helping here. @shashi, @dralletje, @mossr, @fonsp

On Mon, Sep 23, 2024 at 8:40 AM Reuben Gardos Reid @.***> wrote:

Use case: I'd like to combine footnotes from this package with ShortCodes.jl https://github.com/hellemo/ShortCodes.jl/tree/main's DOI to do something like:

md"""As discussed in [^article], we want to do something."""

and further down the document:

md"""[^article]: $DOI(...)"""

Resulting in something like

As discussed in [1], we want to do something.

[1]

Buettner, Florian; Diamanti, Evangelia; Fisher, Jasmin; Göttgens, Berthold; Haghverdi, Laleh; Jawaid, Wajid; Kouskoff, Valerie; Lilly, Andrew J; Macaulay, Iain; Moignard, Victoria; Nishikawa, Shin-Ichi; Piterman, Nir; Tanaka, Yosuke; Theis, Fabian; Wilkinson, Adam C; Woodhouse, Steven Decoding The Regulatory Network Of Early Blood Development From Single-Cell Gene Expression Measurements, Nature Biotechnology (2015) 10/f64rrc https://doi.org/10/f64rrc, cited by 337

It currently doesn't interpolate the DOI object (or any expression within the text) and looks something like this:

As discussed in [1], we want to do something.

[1] DOI("10.1038/nbt.3154")

I guess it has something to do with the way the inner text is just taken verbatim here https://github.com/JuliaPluto/PlutoTeachingTools.jl/blob/ca8cca84e7e0a96eee45ddd193f1b93072c29429/src/footnotes.jl#L17C11-L17C34, and something would need to change there.

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-- Eric Ford

[mossr]

Just as trying to interpolate variables in any other Markdown block (regardless of the footnote or not), you'll have to do the following:

Markdown.parse("""
[^article]: $(DOI(...))
""")