search

JuliaPy / Conda.jl

Conda managing Julia binary dependencies
Other
171 stars 57 forks source link

Conda.clean() fails because of --source-cache in generated call to conda #218

Closed dmbates closed 1 year ago

dmbates commented 2 years ago

Apparently the command line option --source-cache is no longer available for conda clean

julia> versioninfo()
Julia Version 1.8.0-beta3
Commit 3e092a2521 (2022-03-29 15:42 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: 8 × 11th Gen Intel(R) Core(TM) i5-1135G7 @ 2.40GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, tigerlake)
  Threads: 4 on 8 virtual cores

julia> using Pkg; Pkg.status("Conda")
Status `~/.julia/environments/v1.8/Project.toml`
  [8f4d0f93] Conda v1.7.0

shell> conda info

     active environment : None
       user config file : /home/bates/.condarc
 populated config files : /home/bates/.julia/conda/3/.condarc
          conda version : 4.13.0
    conda-build version : not installed
         python version : 3.9.10.final.0
       virtual packages : __linux=5.15.0=0
                          __glibc=2.35=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/bates/.julia/conda/3  (writable)
      conda av data dir : /home/bates/.julia/conda/3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /home/bates/.julia/conda/3/pkgs
                          /home/bates/.conda/pkgs
       envs directories : /home/bates/.julia/conda/3/envs
                          /home/bates/.conda/envs
               platform : linux-64
             user-agent : conda/4.13.0 requests/2.27.1 CPython/3.9.10 Linux/5.15.0-33-generic ubuntu/22.04 glibc/2.35
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False

julia> import Conda

julia> Conda.clean()
usage: conda [-h] [-V] command ...
conda: error: unrecognized arguments: --source-cache
ERROR: failed process: Process(setenv(`/home/bates/.julia/conda/3/bin/conda clean --yes --index-cache --tarballs --packages --source-cache`,["PATH=/home/bates/.local/bin:/home/bates/bin:/home/bates/.juliaup/bin:/home/bates/.local/bin:/home/bates/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin", "QT_ACCESSIBILITY=1", "DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus", "XDG_SESSION_DESKTOP=ubuntu", "XDG_SESSION_TYPE=wayland", "SYSTEMD_EXEC_PID=1640", "USER=bates", "XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg", "LESSCLOSE=/usr/bin/lesspipe %s %s", "QT_IM_MODULE=ibus"  …  "GJS_DEBUG_TOPICS=JS ERROR;JS LOG", "GNOME_SETUP_DISPLAY=:1", "VSCODE_GIT_ASKPASS_MAIN=/usr/share/code/resources/app/extensions/git/dist/askpass-main.js", "ORIGINAL_XDG_CURRENT_DESKTOP=ubuntu:GNOME", "CONDA_PREFIX=/home/bates/.julia/conda/3", "IM_CONFIG_CHECK_ENV=1", "JOURNAL_STREAM=8:32739", "GIO_LAUNCHED_DESKTOP_FILE_PID=24786", "SSH_AGENT_LAUNCHER=gnome-keyring", "LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:"]), ProcessExited(2)) [2]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:561 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:476
 [3] run
   @ ./process.jl:474 [inlined]
 [4] clean(; debug::Bool, index::Bool, locks::Bool, tarballs::Bool, packages::Bool, sources::Bool)
   @ Conda ~/.julia/packages/Conda/x2UxR/src/Conda.jl:381
 [5] clean()
   @ Conda ~/.julia/packages/Conda/x2UxR/src/Conda.jl:362
 [6] top-level scope
   @ REPL[5]:1

julia> Conda.clean(; sources=false)
There are no unused tarball(s) to remove
There are no index cache(s) to remove.
There are no unused package(s) to remove
Process(setenv(`/home/bates/.julia/conda/3/bin/conda clean --yes --index-cache --tarballs --packages`,["PATH=/home/bates/.local/bin:/home/bates/bin:/home/bates/.juliaup/bin:/home/bates/.local/bin:/home/bates/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin", "QT_ACCESSIBILITY=1", "DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus", "XDG_SESSION_DESKTOP=ubuntu", "XDG_SESSION_TYPE=wayland", "SYSTEMD_EXEC_PID=1640", "USER=bates", "XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg", "LESSCLOSE=/usr/bin/lesspipe %s %s", "QT_IM_MODULE=ibus"  …  "GJS_DEBUG_TOPICS=JS ERROR;JS LOG", "GNOME_SETUP_DISPLAY=:1", "VSCODE_GIT_ASKPASS_MAIN=/usr/share/code/resources/app/extensions/git/dist/askpass-main.js", "ORIGINAL_XDG_CURRENT_DESKTOP=ubuntu:GNOME", "CONDA_PREFIX=/home/bates/.julia/conda/3", "IM_CONFIG_CHECK_ENV=1", "JOURNAL_STREAM=8:32739", "GIO_LAUNCHED_DESKTOP_FILE_PID=24786", "SSH_AGENT_LAUNCHER=gnome-keyring", "LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:"]), ProcessExited(0))
stevengj commented 2 years ago

Apparently you nowadays need conda build purge-all (see also ReproNim/neurodocker#260)