Julia can't build and precompile some packages as PyCall.jl The problem is produced in the build process when force the argument when set the root environment with conda install -y --satisfied-skip-solve numpy when the version of conda/mamba do not accept this argument.
It could solve by make false the "satisfied_skip_solve" or simply take off the argument (if do not want to use other verification)
use_conda = dirname(python) == abspath(Conda.PYTHONDIR) if use_conda Conda.add("numpy";satisfied_skip_solve=true ) end
On Mac OSX Sonoma 14.2 apple chip M2
Julia 1.9.3, Python 3.12 and Mamba(Conda)
Cglezf
commented
9 months ago
Julia can't build and precompile some packages as PyCall.jl The problem is produced in the build process when force the argument when set the root environment with
conda install -y --satisfied-skip-solve numpywhen the version of conda/mamba do not accept this argument.It could solve by make false the "satisfied_skip_solve" or simply take off the argument (if do not want to use other verification)
use_conda = dirname(python) == abspath(Conda.PYTHONDIR) if use_conda Conda.add("numpy";satisfied_skip_solve=true )endOn Mac OSX Sonoma 14.2 apple chip M2 Julia 1.9.3, Python 3.12 and Mamba(Conda)
julia> Pkg.build("PyCall"); Pkg.precompile() Building Conda ─→/opt/mamba/envs/mcd/share/julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8c86e48c0db1564a1d49548d3515ced5d604c408/build.logBuilding PyCall →/opt/mamba/envs/mcd/share/julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/43d304ac6f0354755f1d60730ece8c499980f7ba/build.logERROR: Error buildingPyCall: The following argument was not expected: --satisfied-skip-solve Run with --help for more information. [ Info: Runningconda install -y --satisfied-skip-solve numpyin root environment ERROR: LoadError: failed process: Process(setenv(/opt/homebrew/opt/micromamba/bin/micromamba install -y --satisfied-skip-solve numpy`,["FC_FOR_BUILD=/opt/mamba/envs/mcd/bin/x86_64-apple-darwin13.4.0-gfortran", "LSCOLORS=Gxfxcxdxbxegedabagacad", "PATH=/opt/mamba/envs/mcd/bin:/opt/mamba/condabin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Applications/quarto/bin:/opt/homebrew/var/homebrew/linked", "CXX=x86_64-apple-darwin13.4.0-clang++", "DENO_DOM_VERSION=0.1.35-alpha", "F95=/opt/mamba/envs/mcd/bin/x86_64-apple-darwin13.4.0-gfortran", "CC=x86_64-apple-darwin13.4.0-clang", "CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /opt/mamba/envs/mcd/include", "OTOOL=x86_64-apple-darwin13.4.0-otool", "DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /opt/mamba/envs/mcd/include" … "TERM_SESSION_ID=E9F5F9AB-DC24-46BA-85CF-5C439346566B", "ac_cv_func_realloc_0_nonnull=yes", "BUILD=x86_64-apple-darwin13.4.0", "QUARTO_DENO=/opt/mamba/envs/mcd/bin/deno", "JULIA_LOAD_PATH=@:/var/folders/75/ftt9_lrn0292knych8n_rsgw0000gn/T/jl_KuLfDj", "DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem /opt/mamba/envs/mcd/include", "ac_cv_func_malloc_0_nonnull=yes", "MAMBA_ROOT_PREFIX=/opt/mamba", "LS_COLORS=di=1;36:ln=35:so=32:pi=33:ex=31:bd=34;46:cd=34;43:su=30;41:sg=30;46:tw=30;42:ow=30;43", "OPENBLAS_MAIN_FREE=1"]), ProcessExited(109)) [109]Stacktrace: [1] pipeline_error @ ./process.jl:565 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:480 [3] run @ ./process.jl:477 [inlined] [4] runconda(args::Cmd, env::String) @ Conda /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:128 [5] add(pkg::String, env::String; channel::String, satisfied_skip_solve::Bool, args::Cmd) @ Conda /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:256 [6] add @ /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:239 [inlined] [7] top-level scope @ /opt/mamba/envs/mcd/share/julia/packages/PyCall/ilqDX/deps/build.jl:79 [8] include(fname::String) @ Base.MainInclude ./client.jl:478 [9] top-level scope @ none:5 in expression starting at /opt/mamba/envs/mcd/share/julia/packages/PyCall/ilqDX/deps/build.jl:43 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Types.jl:69 [2] (::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String})() @ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1153 [3] withenv(::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:197 [4] (::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec})() @ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1827 [5] with_temp_env(fn::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec}, temp_env::String) @ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1701 [6] (::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String) @ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1790 [7] mktempdir(fn::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:760 [8] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:756 [9] mktempdir @ ./file.jl:756 [inlined] [10] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1748 [11] build_versions(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}; verbose::Bool) @ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1134 [12] build_versions @ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1049 [inlined] [13] build(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}, verbose::Bool) @ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:991 [14] build(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; verbose::Bool, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}}) @ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:1053 [15] build(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:156 [16] build(pkgs::Vector{Pkg.Types.PackageSpec}) @ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:145 [17] #build#85 @ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined] [18] build @ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined] [19] #build#84 @ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:143 [inlined] [20] build(pkg::String) @ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:143 [21] top-level scope @ REPL[46]:1
`