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JuliaPy / PyCall.jl

Package to call Python functions from the Julia language
MIT License
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PyCall + @threads: SIGSEGV (Address boundary error) #885

Open anandijain opened 3 years ago

anandijain commented 3 years ago

This is possibly a duplicate of #882 but I'm not sure. Below is a MWE.

using PyCall
py"""
def f(x):
    return 2*x
"""
f(x) = py"f($x)"
args = 1:100
batch_data = Vector(undef,length(args))
Threads.@threads for i in 1:length(args)
    batch_data[i] = f(args[i])
end
julia> versioninfo()
Julia Version 1.6.0-rc1
Commit a58bdd9010 (2021-02-06 15:49 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-11.0.1 (ORCJIT, skylake)
Environment:
  JULIA_NUM_THREADS = 8

result of @threads loop:

signal (11): Segmentation fault
signal (11): Segmentation fault
in expression starting at REPL[6]n expression starting at REPL[6]:1
in expression starting at REPL[6]:1
in expression starting at REPL[6]:1

signal (11): Segmentation fault
in expression starting at REPL[6]:1

signal (11): Segmentation fault

signal (11): Segmentation fault
in expression starting at REPL[6]:1
in expression starting at REPL[6]:1
unknown function (ip: 0x7f1e694ce7c0)
PyCode_Optimize at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
unknown function (ip: 0x7f1e694cd9fc)
unknown function (ip: 0x7f1e6942debc)
unknown function (ip: 0x7f1e694ce7c0)
unknown function (ip: 0x7f1e694ce0d3)
unknown function (ip: 0x7f1e694ce7c0)
PyNode_New at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
PyAST_CompileObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
PyNode_AddChild at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
unknown function (ip: 0x7f1e694ce7c0)
PyNode_New at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
unknown function (ip: 0x7f1e694cd9fc)
PyParser_New at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
Py_CompileStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
unknown function (ip: 0x7f1e6953eac2)
Py_CompileStringExFlags at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/exception.jl:95 [inlined]
unknown function (ip: 0x7f1e694ce0d3)
pyeval_ at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:34
PyParser_New at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:230 [inlined]
f at ./REPL[3]:1
unknown function (ip: 0x7f1e6b10ced2)
PyParser_AddToken at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
PyParser_ASTFromStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
unknown function (ip: 0x7f1e6953ec6b)
PyNode_AddChild at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
PyNode_New at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
macro expansion at ./REPL[6]:2 [inlined]
#6#threadsfor_fun at ./threadingconstructs.jl:81
PyParser_ASTFromStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
#6#threadsfor_fun at ./threadingconstructs.jl:48
unknown function (ip: 0x7f1e6b10ca2c)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
unknown function (ip: 0x7f1e6953eac2)
y_CompileStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
PyParser_AddToken at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
ne)
PyParser_ASTFromStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
PyParser_ASTFromStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unkPy_CompileStringExFlags at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/exception.jl:95 [inlined]
pyeval_ at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:34
unknown function (ip: 0x7f1e6953ec6b)
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:230 [inlined]
f at ./REPL[3]:1
unknown function (ip: 0x7f1e6b10ced2)
Py_CompileStringExFlags at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/exception.jl:95 [inlined]
Py_CompileStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
pyeval_ at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:34
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:230 [inlined]
f at ./REPL[3]:1
unknown function (ip: 0x7f1e6953eac2)
unknown function (ip: 0x7f1e6953eac2)
PyParser_ASTFromStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
macro expansion at ./REPL[6]:2 [inlined]
Py_CompileStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
#6#threadsfor_fun at ./threadingconstructs.jl:81
u/libpython3.8.so.1.0 (unknown line)
ine)
#6#threadsfor_fun at ./threadingconstructs.jl:81
u/libpython3.8.so.1.0 (unknown line)
#6#threadsfor_fun at ./threadingconstructs.jl:81
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/exception.jl:95 [inlined]
pyeval_ at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:34
Py_CompileStringObject at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:230 [inlined]
f at ./REPL[3]:1
unknown function (ip: 0x7f1e6b10ced2)
Py_CompileStringExFlags at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
#6#threadsfor_fun at ./threadingconstructs.jl:48
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
unknown function (ip: 0x7f1e6b10ca2c)
macro expansion at ./REPL[6]:2 [inlined]
#6#threadsfor_fun at ./threadingconstructs.jl:81
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/exception.jl:95 [inlined]
pyeval_ at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:34
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:230 [inlined]
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
Py_CompileStringExFlags at /usr/lib/x86_64-linux-gnu/libpython3.8.so.1.0 (unknown line)
macro expansion at ./REPL[6]:2 [inlined]
#6#threadsfor_fun at ./threadingconstructs.jl:81
unknown function (ip: 0x7f1e6b10ced2)
#6#threadsfor_fun at ./threadingconstructs.jl:48
/PyCall/tqyST/src/exception.jl:95 [inlined]
#6#threadsfor_fun at ./threadingconstructs.jl:48
pyeval_ at /home/sippycups/.julia/packages/PyCallpyeval_ at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:34
unknown function (ip: 0x7f1e6b10ca2c)
unknown function (ip: 0x7f1e6b10ca2c)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
macro expansion at ./REPL[6]:2 [inlined]
#6#threadsfor_fun at ./threadingconstructs.jl:81
#6#threadsfor_fun at ./threadingconstructs.jl:48
macro expansion at /home/sippycups/.julia/packages/PyCall/tqyST/src/pyeval.jl:230 [inlined]
f at ./REPL[3]:1
unknown function (ip: 0x7f1e6b10ced2)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
unknown function (ip: 0x7f1e6b10ca2c)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
macro expansion at ./REPL[6]:2 [inlined]
#6#threadsfor_fun at ./threadingconstructs.jl:81
#6#threadsfor_fun at ./threadingconstructs.jl:48
unknown function (ip: 0x7f1e6b10ca2c)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2238 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2420
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1703 [inlined]
start_task at /buildworker/worker/package_linux64/build/src/task.c:839
unknown function (ip: (nil))
Allocations: 5942002 (Pool: 5940326; Big: 1676); GC: 6
fish: '/home/sippycups/julia-1.6.0-rc1…' terminated by signal SIGSEGV (Address boundary error)