Open sbromberger opened 7 years ago
PS:
julia> versioninfo()
Julia Version 0.6.0-rc3.0
Commit ad290e93e4 (2017-06-07 11:53 UTC)
Platform Info:
OS: macOS (x86_64-apple-darwin16.5.0)
CPU: Intel(R) Core(TM) i5-6267U CPU @ 2.90GHz
WORD_SIZE: 64
BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
LAPACK: libopenblas64_
LIBM: libopenlibm
LLVM: libLLVM-3.9.1 (ORCJIT, skylake)
all packages are checked out to master.
PGFPlots.jl doesn't have the ability to plot graphs (the type with nodes and edges). Perhaps you want TikzGraphs.jl?
Or maybe I'm not understanding how this is supposed to work? One thing that would help me debug this is to run
using TikzPictures
tikzDeleteIntermediate(false)
and then send me the .tex file that gets produced in the current directory. That line 211 in your error message indicates that lualatex is having trouble compiling the tex file.
I was under the impression that plotrecipes would allow graph plotting regardless of backend. Perhaps that was a bad assumption. In any case, I'll send the tex file.
Update: there is no .tex file generated. Here's the complete session:
phasebang:Plots$ julia6
_
_ _ _(_)_ | A fresh approach to technical computing
(_) | (_) (_) | Documentation: https://docs.julialang.org
_ _ _| |_ __ _ | Type "?help" for help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 0.6.0-rc3.0 (2017-06-07 11:53 UTC)
_/ |\__'_|_|_|\__'_| |
|__/ | x86_64-apple-darwin16.5.0
julia> using Plots, PlotRecipes, TikzPictures
WARNING: Method definition macroexpand(Module, Any) in module Compat at /Users/bromberger1/.julia/v0.6/Compat/src/Compat.jl:1491 overwritten in module MacroTools at /Users/bromberger1/.julia/v0.6/MacroTools/src/utils.jl:64.
julia> using LightGraphs
julia> g = Graph(3,3)
{3, 3} undirected simple Int64 graph
julia> pgfplots()
Plots.PGFPlotsBackend()
julia> tikzDeleteIntermWARNING: both LightGraphs and PlotRecipes export "center"; uses of it in module Main must be qualified
WARNING: both LightGraphs and PlotRecipes export "density"; uses of it in module Main must be qualified
julia> tikzDeleteIntermediate(false)
julia> graphplot(g)
WARNING: Array{T}(::Type{T}, m::Int) is deprecated, use Array{T}(m) instead.
Stacktrace:
[1] depwarn(::String, ::Symbol) at ./deprecated.jl:70
[2] Array(::Type{Int64}, ::Int64) at ./deprecated.jl:57
[3] get_source_destiny_weight(::SparseMatrixCSC{Float64,Int64}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:39
[4] estimate_distance(::Array{Float64,2}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:162
[5] #by_axis_local_stress_graph#6(::Array{Float64,1}, ::Int64, ::Array{Int64,1}, ::Array{Float64,1}, ::Array{Float64,1}, ::Array{Float64,1}, ::Int64, ::Array{Any,1}, ::PlotRecipes.#by_axis_local_stress_graph, ::Array{Float64,2}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graph_layouts.jl:101
[6] (::PlotRecipes.#kw##by_axis_local_stress_graph)(::Array{Any,1}, ::PlotRecipes.#by_axis_local_stress_graph, ::Array{Float64,2}) at ./<missing>:0
[7] macro expansion at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:268 [inlined]
[8] apply_recipe(::Dict{Symbol,Any}, ::PlotRecipes.GraphPlot) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:259
[9] _process_userrecipes(::Plots.Plot{Plots.PGFPlotsBackend}, ::Dict{Symbol,Any}, ::Tuple{PlotRecipes.GraphPlot}) at /Users/bromberger1/.julia/v0.6/Plots/src/pipeline.jl:73
[10] _plot!(::Plots.Plot{Plots.PGFPlotsBackend}, ::Dict{Symbol,Any}, ::Tuple{PlotRecipes.GraphPlot}) at /Users/bromberger1/.julia/v0.6/Plots/src/plot.jl:171
[11] #graphplot#27(::Array{Any,1}, ::Function, ::LightGraphs.SimpleGraphs.SimpleGraph{Int64}, ::Vararg{LightGraphs.SimpleGraphs.SimpleGraph{Int64},N} where N) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:336
[12] graphplot(::LightGraphs.SimpleGraphs.SimpleGraph{Int64}, ::Vararg{LightGraphs.SimpleGraphs.SimpleGraph{Int64},N} where N) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:336
[13] eval(::Module, ::Any) at ./boot.jl:235
[14] eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:66
[15] macro expansion at ./REPL.jl:97 [inlined]
[16] (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:73
while loading no file, in expression starting on line 0
WARNING: Array{T}(::Type{T}, m::Int) is deprecated, use Array{T}(m) instead.
Stacktrace:
[1] depwarn(::String, ::Symbol) at ./deprecated.jl:70
[2] Array(::Type{Int64}, ::Int64) at ./deprecated.jl:57
[3] get_source_destiny_weight(::SparseMatrixCSC{Float64,Int64}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:40
[4] estimate_distance(::Array{Float64,2}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:162
[5] #by_axis_local_stress_graph#6(::Array{Float64,1}, ::Int64, ::Array{Int64,1}, ::Array{Float64,1}, ::Array{Float64,1}, ::Array{Float64,1}, ::Int64, ::Array{Any,1}, ::PlotRecipes.#by_axis_local_stress_graph, ::Array{Float64,2}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graph_layouts.jl:101
[6] (::PlotRecipes.#kw##by_axis_local_stress_graph)(::Array{Any,1}, ::PlotRecipes.#by_axis_local_stress_graph, ::Array{Float64,2}) at ./<missing>:0
[7] macro expansion at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:268 [inlined]
[8] apply_recipe(::Dict{Symbol,Any}, ::PlotRecipes.GraphPlot) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:259
[9] _process_userrecipes(::Plots.Plot{Plots.PGFPlotsBackend}, ::Dict{Symbol,Any}, ::Tuple{PlotRecipes.GraphPlot}) at /Users/bromberger1/.julia/v0.6/Plots/src/pipeline.jl:73
[10] _plot!(::Plots.Plot{Plots.PGFPlotsBackend}, ::Dict{Symbol,Any}, ::Tuple{PlotRecipes.GraphPlot}) at /Users/bromberger1/.julia/v0.6/Plots/src/plot.jl:171
[11] #graphplot#27(::Array{Any,1}, ::Function, ::LightGraphs.SimpleGraphs.SimpleGraph{Int64}, ::Vararg{LightGraphs.SimpleGraphs.SimpleGraph{Int64},N} where N) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:336
[12] graphplot(::LightGraphs.SimpleGraphs.SimpleGraph{Int64}, ::Vararg{LightGraphs.SimpleGraphs.SimpleGraph{Int64},N} where N) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:336
[13] eval(::Module, ::Any) at ./boot.jl:235
[14] eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:66
[15] macro expansion at ./REPL.jl:97 [inlined]
[16] (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:73
while loading no file, in expression starting on line 0
WARNING: Array{T}(::Type{T}, m::Int) is deprecated, use Array{T}(m) instead.
Stacktrace:
[1] depwarn(::String, ::Symbol) at ./deprecated.jl:70
[2] Array(::Type{Float64}, ::Int64) at ./deprecated.jl:57
[3] get_source_destiny_weight(::SparseMatrixCSC{Float64,Int64}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:41
[4] estimate_distance(::Array{Float64,2}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:162
[5] #by_axis_local_stress_graph#6(::Array{Float64,1}, ::Int64, ::Array{Int64,1}, ::Array{Float64,1}, ::Array{Float64,1}, ::Array{Float64,1}, ::Int64, ::Array{Any,1}, ::PlotRecipes.#by_axis_local_stress_graph, ::Array{Float64,2}) at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graph_layouts.jl:101
[6] (::PlotRecipes.#kw##by_axis_local_stress_graph)(::Array{Any,1}, ::PlotRecipes.#by_axis_local_stress_graph, ::Array{Float64,2}) at ./<missing>:0
[7] macro expansion at /Users/bromberger1/.julia/v0.6/PlotRecipes/src/graphs.jl:268 [inlined]
[8] apply_recipe(::Dict{Symbol,Any}, ::PlotRecipes.GraphPlot) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:259
[9] _process_userrecipes(::Plots.Plot{Plots.PGFPlotsBackend}, ::Dict{Symbol,Any}, ::Tuple{PlotRecipes.GraphPlot}) at /Users/bromberger1/.julia/v0.6/Plots/src/pipeline.jl:73
[10] _plot!(::Plots.Plot{Plots.PGFPlotsBackend}, ::Dict{Symbol,Any}, ::Tuple{PlotRecipes.GraphPlot}) at /Users/bromberger1/.julia/v0.6/Plots/src/plot.jl:171
[11] #graphplot#27(::Array{Any,1}, ::Function, ::LightGraphs.SimpleGraphs.SimpleGraph{Int64}, ::Vararg{LightGraphs.SimpleGraphs.SimpleGraph{Int64},N} where N) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:336
[12] graphplot(::LightGraphs.SimpleGraphs.SimpleGraph{Int64}, ::Vararg{LightGraphs.SimpleGraphs.SimpleGraph{Int64},N} where N) at /Users/bromberger1/.julia/v0.6/RecipesBase/src/RecipesBase.jl:336
[13] eval(::Module, ::Any) at ./boot.jl:235
[14] eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:66
[15] macro expansion at ./REPL.jl:97 [inlined]
[16] (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:73
while loading no file, in expression starting on line 0
1mERROR: LaTeX error
Stacktrace:
[1] save(::TikzPictures.PDF, ::TikzPictures.TikzPicture) at /Users/bromberger1/.julia/v0.6/TikzPictures/src/TikzPictures.jl:211
[2] _show(::IOStream, ::MIME{Symbol("application/pdf")}, ::Plots.Plot{Plots.PGFPlotsBackend}) at /Users/bromberger1/.julia/v0.6/Plots/src/backends/pgfplots.jl:403
[3] show(::IOStream, ::MIME{Symbol("application/pdf")}, ::Plots.Plot{Plots.PGFPlotsBackend}) at /Users/bromberger1/.julia/v0.6/Plots/src/output.jl:197
[4] pdf(::Plots.Plot{Plots.PGFPlotsBackend}, ::String) at /Users/bromberger1/.julia/v0.6/Plots/src/output.jl:25
[5] _show(::Base64EncodePipe, ::MIME{Symbol("image/png")}, ::Plots.Plot{Plots.PGFPlotsBackend}) at /Users/bromberger1/.julia/v0.6/Plots/src/output.jl:213
[6] display(::TerminalExtensions.iTerm2.InlineDisplay, ::MIME{Symbol("image/png")}, ::Plots.Plot{Plots.PGFPlotsBackend}) at /Users/bromberger1/.julia/v0.6/TerminalExtensions/src/TerminalExtensions.jl:93
[7] display(::TerminalExtensions.iTerm2.InlineDisplay, ::Plots.Plot{Plots.PGFPlotsBackend}) at /Users/bromberger1/.julia/v0.6/TerminalExtensions/src/TerminalExtensions.jl:103
[8] display(::Plots.Plot{Plots.PGFPlotsBackend}) at ./multimedia.jl:194
[9] eval(::Module, ::Any) at ./boot.jl:235
[10] print_response(::Base.Terminals.TTYTerminal, ::Any, ::Void, ::Bool, ::Bool, ::Void) at ./REPL.jl:144
[11] print_response(::Base.REPL.LineEditREPL, ::Any, ::Void, ::Bool, ::Bool) at ./REPL.jl:129
[12] (::Base.REPL.#do_respond#16{Bool,Base.REPL.##26#36{Base.REPL.LineEditREPL,Base.REPL.REPLHistoryProvider},Base.REPL.LineEditREPL,Base.LineEdit.Prompt})(::Base.LineEdit.MIState, ::Base.AbstractIOBuffer{Array{UInt8,1}}, ::Bool) at ./REPL.jl:646
[13] (::TerminalExtensions.##3#6)(::Base.LineEdit.MIState, ::Vararg{Any,N} where N) at /Users/bromberger1/.julia/v0.6/TerminalExtensions/src/TerminalExtensions.jl:156
julia>
I think I figured out the problem. See my suggested fix here: https://github.com/JuliaPlots/PlotRecipes.jl/issues/28
Thank you! Hopefully we can get this fixed.
Hi,
graphplot()
is part ofPlotRecipes.jl
and allows plotting LightGraphs graphs. The function works without problems on other backends, but withPGFPlots
it fails withAny ideas on how to fix?