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JuliaWolleb / Diffusion-based-Segmentation

This is the official Pytorch implementation of the paper "Diffusion Models for Implicit Image Segmentation Ensembles".
MIT License
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about the Brats Dataset #22

Closed qb02su closed 1 year ago

qb02su commented 1 year ago

The original Brats Dataset are 3D slices, how you transform them to 2D slices like sample dataset

JuliaWolleb commented 1 year ago

As described in Section 3 of the paper, we slice the 3D MR scans in axial slices. Since tumors rarely occur on the upper or lower part of the brain, we exclude the lowest 80 slices and the uppermost 26 slices.

saisusmitha commented 1 year ago

@JuliaWolleb where is this - the exclusion of 80 and 26 slices happening in the code? kindly tell me