Would you please public the code for make the Brats data into the slices you mentioned in the paper?

JuliaWolleb / Diffusion-based-Segmentation

This is the official Pytorch implementation of the paper "Diffusion Models for Implicit Image Segmentation Ensembles".

MIT License

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Would you please public the code for make the Brats data into the slices you mentioned in the paper? #47

Open cqlouis opened 9 months ago

cqlouis commented 9 months ago

The original Brtas2020 is 155240240, but the paper said it should be change into slices with 5240240, Would you provide the code for that? Thanks advanced!

JuliaWolleb commented 8 months ago

Hi We sliced the 3D volume into 2D axial slices, and cropped them to a size of 224x224 (to cut some zero values around the brain). We stack the input to 5 channels ( 4 for the different MR sequences, and 1 for the noisy segmentation mask).