Individual motif accepts gap with . and -

Jumitti / TFinder

Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.

https://tfinder-ipmc.streamlit.app/

MIT License

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Individual motif accepts gap with . and - #23

Closed Jumitti closed 1 year ago

Jumitti commented 1 year ago

Because streamlit allows only 1Go Ram we can generate more than 1048576 variants of Individual motif with IUPAC.

We add a limit if IM have more than 1048576 variants. 1048576 variants are equel to NNNNNNNNNN.

To avoid this problem we add posibility to use . or -. In the PWM . or - is equal to zero.