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JunMa11 / SegWithDistMap

How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study
https://openreview.net/forum?id=hM4pNbXWst
Apache License 2.0
375 stars 67 forks source link

The problem of processing own data into H5 data #17

Closed minhoooo1 closed 3 years ago

minhoooo1 commented 3 years ago

Hello author！ I am very interested in your work. I think your work is very frontier and challenging. I also want to use the code here to segment my own 3D enhanced CT image (nifti format 3D image). How do you process the data into H5 format? thank you!

JunMa11 commented 3 years ago

Hi @minhoooo1 ,

Thanks for your kind word.

Hope this function can help you:) https://github.com/yulequan/UA-MT/blob/88ed29ad794f877122e542a7fa9505a76fa83515/code/dataloaders/la_heart_processing.py#L9

minhoooo1 commented 3 years ago

In order to understand the data processing process more clearly.Could you please provide the original data not processed into H5 format  ! Thank you very much !

发自我的iPhone

------------------ Original ------------------ From: Jun @.> Date: Wed,May 5,2021 10:16 AM To: JunMa11/SegWithDistMap @.> Cc: minhoooo1 @.>, Mention @.> Subject: Re: [JunMa11/SegWithDistMap] The problem of processing own data into H5 data (#17)

Hi @minhoooo1 ,

Thanks for your kind word.

Hope this function can help you:) https://github.com/yulequan/UA-MT/blob/88ed29ad794f877122e542a7fa9505a76fa83515/code/dataloaders/la_heart_processing.py#L9

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minhoooo1 commented 3 years ago

看到您知乎上的评论回复，好像原始数据并不允许分享，那么在这里我只想请求一张nrrd格式的图片，不知道方不方便呢。感谢了🙏！

发自我的iPhone

------------------ Original ------------------ From: Jun @.> Date: Wed,May 5,2021 10:16 AM To: JunMa11/SegWithDistMap @.> Cc: minhoooo1 @.>, Mention @.> Subject: Re: [JunMa11/SegWithDistMap] The problem of processing own data into H5 data (#17)

Hi @minhoooo1 ,

Thanks for your kind word.

Hope this function can help you:) https://github.com/yulequan/UA-MT/blob/88ed29ad794f877122e542a7fa9505a76fa83515/code/dataloaders/la_heart_processing.py#L9

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minhoooo1 commented 3 years ago

Hello author, I'm sorry to disturb you again. Today, I seriously studied the data processing. At present, I only have this section of code. I don't understand it very well. Please explain it Thank you! https://github.com/yulequan/UA-MT/blob/88ed29ad794f877122e542a7fa9505a76fa83515/code/dataloaders/la_heart_processing.py#L14

minhoooo1 commented 3 years ago

I'm sorry to disturb you for so long. I've got it Thank you!

------------------ 原始邮件 ------------------ 发件人: @.>; 发送时间: 2021年5月16日(星期天) 晚上9:19 收件人: @.>; 抄送: @.>; @.>; 主题: Re: [JunMa11/SegWithDistMap] The problem of processing own data into H5 data (#17)

Closed #17.

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