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JunyueC / sci-fate_analysis

Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
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RNA velocity #2

Open akdess opened 4 years ago

akdess commented 4 years ago

Hi,

Thanks a lot for providing all the scripts. I would like to get the scvelo outputs with the spliced and unspliced read counts.(sci-fate_analysis/script_downstream_processing/scifate_RNA_velocity.py). I would appreciate if you can share the scvelo input files so I can run the scifate_RNA_velocity.py script.

Thanks a lot! Akdes

JunyueC commented 4 years ago

Hi Akdes,

Thanks for your interest in sci-fate!

The RNA velocity analysis is for internal testing and this function is not included in the sci-fate pipeline. I can send the exonic/intronic data to your email address if you are still interested.

Best, Jun

On Jun 19, 2020, at 8:07 PM, Akdes Serin Harmanci notifications@github.com wrote:

Hi,

Thanks a lot for providing all the scripts. I would like to get the scvelo outputs with the spliced and unspliced read counts.(sci-fate_analysis/script_downstream_processing/scifate_RNA_velocity.py). I would appreciate if you can share the scvelo input files so I can run the scifate_RNA_velocity.py script.

Thanks a lot! Akdes

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akdess commented 4 years ago

I would appreciate if you can send it to me via email: akdess at gmail com

I know you shared the raw data on GEO but if you also have input bam files for velocity analysis in an easily accessable storage that would also be great!

Thanks a lot for all your help!