Dcosthephalump
commented
1 year ago This is a long comment. Each non-output paragraph will be tagged with [noutput] and each output pargaraph tagged with [output] for easy searching.
[noutput] While working on "Build an environment in binder/environment.yml", there was a problem. After using conda env create -f environment.yml from the binder folder, I got the following [output]:
> Collecting package metadata (repodata.json): done
> Solving environment: done
>
>
> ==> WARNING: A newer version of conda exists. <==
> current version: 23.3.1
> latest version: 23.5.0
>
> Please update conda by running
>
> $ conda update -n base -c defaults conda
>
> Or to minimize the number of packages updated during conda update use
>
> conda install conda=23.5.0
>
>
>
> Downloading and Extracting Packages
>
>
> InvalidArchiveError('Error with archive C:\\Users\\David\\anaconda3\\pkgs\\jupyterlab_html-v0.1.0-0.tar.bz2. You probably need to delete and re-download or re-create this file. Message was:\n\nfailed with error: seeking backwards is not allowed')
[noutput] I decided to use conda update -n base -c defaults conda as recommended. This gave the following [output]:
> Collecting package metadata (current_repodata.json): done
> Solving environment: done
>
> ## Package Plan ##
>
> environment location: C:\Users\David\anaconda3
>
> added / updated specs:
> - conda
>
>
> The following packages will be downloaded:
>
> package | build
> ---------------------------|-----------------
> beautifulsoup4-4.12.2 | py310haa95532_0 212 KB
> conda-23.5.0 | py310haa95532_0 1.0 MB
> jupyter_core-5.3.0 | py310haa95532_0 108 KB
> krb5-1.19.4 | h5b6d351_0 786 KB
> libarchive-3.6.2 | h2033e3e_1 1.8 MB
> libclang-14.0.6 |default_hb5a9fac_1 154 KB
> libclang13-14.0.6 |default_h8e68704_1 22.5 MB
> libffi-3.4.4 | hd77b12b_0 113 KB
> libxml2-2.10.3 | h0ad7f3c_0 2.9 MB
> libxslt-1.1.37 | h2bbff1b_0 448 KB
> navigator-updater-0.4.0 | py310haa95532_0 2.3 MB
> packaging-23.0 | py310haa95532_0 70 KB
> qt-main-5.15.2 | he8e5bd7_8 59.4 MB
> qtwebkit-5.212 | h2bbfb41_5 11.6 MB
> requests-2.29.0 | py310haa95532_0 98 KB
> soupsieve-2.4 | py310haa95532_0 70 KB
> sqlite-3.41.2 | h2bbff1b_0 894 KB
> tornado-6.2 | py310h2bbff1b_0 619 KB
> tqdm-4.65.0 | py310h9909e9c_0 149 KB
> tzdata-2023c | h04d1e81_0 116 KB
> urllib3-1.26.16 | py310haa95532_0 202 KB
> xz-5.4.2 | h8cc25b3_0 592 KB
> zstd-1.5.5 | hd43e919_0 682 KB
> ------------------------------------------------------------
> Total: 106.7 MB
>
> The following NEW packages will be INSTALLED:
>
> krb5 pkgs/main/win-64::krb5-1.19.4-h5b6d351_0
> libclang13 pkgs/main/win-64::libclang13-14.0.6-default_h8e68704_1
>
> The following packages will be REMOVED:
>
> alabaster-0.7.12-pyhd3eb1b0_0
> anyio-3.5.0-py310haa95532_0
> appdirs-1.4.4-pyhd3eb1b0_0
> argon2-cffi-21.3.0-pyhd3eb1b0_0
> argon2-cffi-bindings-21.2.0-py310h2bbff1b_0
> arrow-1.2.3-py310haa95532_1
> astroid-2.14.2-py310haa95532_0
> astropy-5.1-py310h9128911_0
> asttokens-2.0.5-pyhd3eb1b0_0
> atomicwrites-1.4.0-py_0
> automat-20.2.0-py_0
> autopep8-1.6.0-pyhd3eb1b0_1
> babel-2.11.0-py310haa95532_0
> backcall-0.2.0-pyhd3eb1b0_0
> bcrypt-3.2.0-py310h2bbff1b_1
> binaryornot-0.4.4-pyhd3eb1b0_1
> black-22.6.0-py310haa95532_0
> blas-1.0-mkl
> bleach-4.1.0-pyhd3eb1b0_0
> blosc-1.21.3-h6c2663c_0
> bokeh-2.4.3-py310haa95532_0
> bottleneck-1.3.5-py310h9128911_0
> brotli-1.0.9-h2bbff1b_7
> brotli-bin-1.0.9-h2bbff1b_7
> cfitsio-3.470-h2bbff1b_7
> charls-2.2.0-h6c2663c_0
> cloudpickle-2.0.0-pyhd3eb1b0_0
> colorcet-3.0.1-py310haa95532_0
> comm-0.1.2-py310haa95532_0
> constantly-15.1.0-py310haa95532_0
> contourpy-1.0.5-py310h59b6b97_0
> cookiecutter-1.7.3-pyhd3eb1b0_0
> cssselect-1.1.0-pyhd3eb1b0_0
> curl-7.87.0-h2bbff1b_0
> cycler-0.11.0-pyhd3eb1b0_0
> cytoolz-0.12.0-py310h2bbff1b_0
> daal4py-2023.0.2-py310hf497b98_0
> dal-2023.0.1-h59b6b97_26646
> dask-2022.7.0-py310haa95532_0
> dask-core-2022.7.0-py310haa95532_0
> datashader-0.14.4-py310haa95532_0
> datashape-0.5.4-py310haa95532_1
> debugpy-1.5.1-py310hd77b12b_0
> decorator-5.1.1-pyhd3eb1b0_0
> diff-match-patch-20200713-pyhd3eb1b0_0
> dill-0.3.6-py310haa95532_0
> distributed-2022.7.0-py310haa95532_0
> docstring-to-markdown-0.11-py310haa95532_0
> docutils-0.18.1-py310haa95532_3
> entrypoints-0.4-py310haa95532_0
> et_xmlfile-1.1.0-py310haa95532_0
> executing-0.8.3-pyhd3eb1b0_0
> flake8-6.0.0-py310haa95532_0
> flask-2.2.2-py310haa95532_0
> flit-core-3.6.0-pyhd3eb1b0_0
> fonttools-4.25.0-pyhd3eb1b0_0
> fsspec-2022.11.0-py310haa95532_0
> gensim-4.3.0-py310h4ed8f06_0
> greenlet-2.0.1-py310hd77b12b_0
> h5py-3.7.0-py310hfc34f40_0
> hdf5-1.10.6-h1756f20_1
> heapdict-1.0.1-pyhd3eb1b0_0
> holoviews-1.15.4-py310haa95532_0
> huggingface_hub-0.10.1-py310haa95532_0
> hvplot-0.8.2-py310haa95532_0
> hyperlink-21.0.0-pyhd3eb1b0_0
> icc_rt-2022.1.0-h6049295_2
> imagecodecs-2021.8.26-py310h4c966c4_2
> imageio-2.26.0-py310haa95532_0
> imagesize-1.4.1-py310haa95532_0
> imbalanced-learn-0.10.1-py310haa95532_0
> importlib-metadata-4.11.3-py310haa95532_0
> importlib_metadata-4.11.3-hd3eb1b0_0
> incremental-21.3.0-pyhd3eb1b0_0
> inflection-0.5.1-py310haa95532_0
> iniconfig-1.1.1-pyhd3eb1b0_0
> intake-0.6.7-py310haa95532_0
> intel-openmp-2021.4.0-haa95532_3556
> intervaltree-3.1.0-pyhd3eb1b0_0
> ipykernel-6.19.2-py310h9909e9c_0
> ipython-8.10.0-py310haa95532_0
> ipython_genutils-0.2.0-pyhd3eb1b0_1
> ipywidgets-7.6.5-pyhd3eb1b0_1
> isort-5.9.3-pyhd3eb1b0_0
> itemadapter-0.3.0-pyhd3eb1b0_0
> itemloaders-1.0.4-pyhd3eb1b0_1
> itsdangerous-2.0.1-pyhd3eb1b0_0
> jedi-0.18.1-py310haa95532_1
> jellyfish-0.9.0-py310h2bbff1b_0
> jinja2-time-0.2.0-pyhd3eb1b0_3
> jmespath-0.10.0-pyhd3eb1b0_0
> joblib-1.1.1-py310haa95532_0
> jq-1.6-haa95532_1
> json5-0.9.6-pyhd3eb1b0_0
> jupyter-1.0.0-py310haa95532_8
> jupyter_client-7.3.4-py310haa95532_0
> jupyter_console-6.6.2-py310haa95532_0
> jupyter_server-1.23.4-py310haa95532_0
> jupyterlab-3.5.3-py310haa95532_0
> jupyterlab_pygments-0.1.2-py_0
> jupyterlab_server-2.19.0-py310haa95532_0
> jupyterlab_widgets-1.0.0-pyhd3eb1b0_1
> jxrlib-1.1-he774522_2
> keyring-23.4.0-py310haa95532_0
> kiwisolver-1.4.4-py310hd77b12b_0
> lazy-object-proxy-1.6.0-py310h2bbff1b_0
> lcms2-2.12-h83e58a3_0
> libaec-1.0.4-h33f27b4_1
> libbrotlicommon-1.0.9-h2bbff1b_7
> libbrotlidec-1.0.9-h2bbff1b_7
> libbrotlienc-1.0.9-h2bbff1b_7
> libcurl-7.87.0-h86230a5_0
> libsodium-1.0.18-h62dcd97_0
> libspatialindex-1.9.3-h6c2663c_0
> libssh2-1.10.0-hcd4344a_0
> libuv-1.44.2-h2bbff1b_0
> libzopfli-1.0.3-ha925a31_0
> llvmlite-0.39.1-py310h23ce68f_0
> locket-1.0.0-py310haa95532_0
> lxml-4.9.1-py310h1985fb9_0
> lz4-3.1.3-py310h2bbff1b_0
> lzo-2.10-he774522_2
> m2w64-libwinpthread-git-5.0.0.4634.697f757-2
> markdown-3.4.1-py310haa95532_0
> matplotlib-3.7.0-py310haa95532_0
> matplotlib-base-3.7.0-py310h4ed8f06_0
> matplotlib-inline-0.1.6-py310haa95532_0
> mccabe-0.7.0-pyhd3eb1b0_0
> mistune-0.8.4-py310h2bbff1b_1000
> mkl-2021.4.0-haa95532_640
> mkl-service-2.4.0-py310h2bbff1b_0
> mkl_fft-1.3.1-py310ha0764ea_0
> mkl_random-1.2.2-py310h4ed8f06_0
> mock-4.0.3-pyhd3eb1b0_0
> mpmath-1.2.1-py310haa95532_0
> msgpack-python-1.0.3-py310h59b6b97_0
> multipledispatch-0.6.0-py310haa95532_0
> munkres-1.1.4-py_0
> mypy_extensions-0.4.3-py310haa95532_1
> nbclassic-0.5.2-py310haa95532_0
> nbclient-0.5.13-py310haa95532_0
> nbconvert-6.5.4-py310haa95532_0
> nest-asyncio-1.5.6-py310haa95532_0
> networkx-2.8.4-py310haa95532_0
> ninja-1.10.2-haa95532_5
> ninja-base-1.10.2-h6d14046_5
> nltk-3.7-pyhd3eb1b0_0
> notebook-6.5.2-py310haa95532_0
> notebook-shim-0.2.2-py310haa95532_0
> numba-0.56.4-py310h4ed8f06_0
> numexpr-2.8.4-py310hd213c9f_0
> numpy-1.23.5-py310h60c9a35_0
> numpy-base-1.23.5-py310h04254f7_0
> numpydoc-1.5.0-py310haa95532_0
> openjpeg-2.4.0-h4fc8c34_0
> openpyxl-3.0.10-py310h2bbff1b_0
> pandas-1.5.3-py310h4ed8f06_0
> pandocfilters-1.5.0-pyhd3eb1b0_0
> panel-0.14.3-py310haa95532_0
> param-1.12.3-py310haa95532_0
> paramiko-2.8.1-pyhd3eb1b0_0
> parsel-1.6.0-py310haa95532_0
> parso-0.8.3-pyhd3eb1b0_0
> partd-1.2.0-pyhd3eb1b0_1
> pathspec-0.10.3-py310haa95532_0
> patsy-0.5.3-py310haa95532_0
> pep8-1.7.1-py310haa95532_1
> pexpect-4.8.0-pyhd3eb1b0_3
> pickleshare-0.7.5-pyhd3eb1b0_1003
> plotly-5.9.0-py310haa95532_0
> pooch-1.4.0-pyhd3eb1b0_0
> poyo-0.5.0-pyhd3eb1b0_0
> prometheus_client-0.14.1-py310haa95532_0
> prompt-toolkit-3.0.36-py310haa95532_0
> prompt_toolkit-3.0.36-hd3eb1b0_0
> protego-0.1.16-py_0
> ptyprocess-0.7.0-pyhd3eb1b0_2
> pure_eval-0.2.2-pyhd3eb1b0_0
> py-1.11.0-pyhd3eb1b0_0
> pyasn1-0.4.8-pyhd3eb1b0_0
> pyasn1-modules-0.2.8-py_0
> pycodestyle-2.10.0-py310haa95532_0
> pyct-0.5.0-py310haa95532_0
> pycurl-7.45.1-py310hcd4344a_0
> pydispatcher-2.0.5-py310haa95532_2
> pydocstyle-6.3.0-py310haa95532_0
> pyerfa-2.0.0-py310h2bbff1b_0
> pyflakes-3.0.1-py310haa95532_0
> pygments-2.11.2-pyhd3eb1b0_0
> pyhamcrest-2.0.2-pyhd3eb1b0_2
> pylint-2.16.2-py310haa95532_0
> pylint-venv-2.3.0-py310haa95532_0
> pyls-spyder-0.4.0-pyhd3eb1b0_0
> pynacl-1.5.0-py310h8cc25b3_0
> pyodbc-4.0.34-py310hd77b12b_0
> pyparsing-3.0.9-py310haa95532_0
> pyqtwebengine-5.15.7-py310hd77b12b_0
> pytables-3.7.0-py310h388bc9b_1
> pytest-7.1.2-py310haa95532_0
> python-lsp-black-1.2.1-py310haa95532_0
> python-lsp-jsonrpc-1.0.0-pyhd3eb1b0_0
> python-lsp-server-1.7.1-py310haa95532_0
> python-slugify-5.0.2-pyhd3eb1b0_0
> python-snappy-0.6.1-py310hd77b12b_0
> pytoolconfig-1.2.5-py310haa95532_1
> pytorch-1.12.1-cpu_py310h5e1f01c_1
> pyviz_comms-2.0.2-pyhd3eb1b0_0
> pywavelets-1.4.1-py310h2bbff1b_0
> pywin32-ctypes-0.2.0-py310haa95532_1000
> pywinpty-2.0.10-py310h5da7b33_0
> pyzmq-23.2.0-py310hd77b12b_0
> qdarkstyle-3.0.2-pyhd3eb1b0_0
> qstylizer-0.2.2-py310haa95532_0
> qtawesome-1.2.2-py310haa95532_0
> qtconsole-5.4.0-py310haa95532_0
> queuelib-1.5.0-py310haa95532_0
> regex-2022.7.9-py310h2bbff1b_0
> requests-file-1.5.1-pyhd3eb1b0_0
> rope-1.7.0-py310haa95532_0
> rtree-1.0.1-py310h2eaa2aa_0
> scikit-image-0.19.3-py310hd77b12b_1
> scikit-learn-1.2.1-py310hd77b12b_0
> scikit-learn-intelex-2023.0.2-py310haa95532_0
> scipy-1.10.0-py310hb9afe5d_1
> scrapy-2.8.0-py310haa95532_0
> seaborn-0.12.2-py310haa95532_0
> send2trash-1.8.0-pyhd3eb1b0_1
> service_identity-18.1.0-pyhd3eb1b0_1
> smart_open-5.2.1-py310haa95532_0
> snappy-1.1.9-h6c2663c_0
> sniffio-1.2.0-py310haa95532_1
> snowballstemmer-2.2.0-pyhd3eb1b0_0
> sortedcontainers-2.4.0-pyhd3eb1b0_0
> sphinx-5.0.2-py310haa95532_0
> sphinxcontrib-applehelp-1.0.2-pyhd3eb1b0_0
> sphinxcontrib-devhelp-1.0.2-pyhd3eb1b0_0
> sphinxcontrib-htmlhelp-2.0.0-pyhd3eb1b0_0
> sphinxcontrib-jsmath-1.0.1-pyhd3eb1b0_0
> sphinxcontrib-qthelp-1.0.3-pyhd3eb1b0_0
> sphinxcontrib-serializinghtml-1.1.5-pyhd3eb1b0_0
> spyder-5.4.1-py310haa95532_0
> spyder-kernels-2.4.1-py310haa95532_0
> sqlalchemy-1.4.39-py310h2bbff1b_0
> stack_data-0.2.0-pyhd3eb1b0_0
> statsmodels-0.13.5-py310h9128911_1
> sympy-1.11.1-py310haa95532_0
> tabulate-0.8.10-py310haa95532_0
> tbb-2021.7.0-h59b6b97_0
> tbb4py-2021.7.0-py310h59b6b97_0
> tblib-1.7.0-pyhd3eb1b0_0
> tenacity-8.0.1-py310haa95532_1
> terminado-0.17.1-py310haa95532_0
> text-unidecode-1.3-pyhd3eb1b0_0
> textdistance-4.2.1-pyhd3eb1b0_0
> threadpoolctl-2.2.0-pyh0d69192_0
> three-merge-0.1.1-pyhd3eb1b0_0
> tifffile-2021.7.2-pyhd3eb1b0_2
> tinycss2-1.2.1-py310haa95532_0
> tldextract-3.2.0-pyhd3eb1b0_0
> tokenizers-0.11.4-py310he5181cf_1
> tomlkit-0.11.1-py310haa95532_0
> transformers-4.24.0-py310haa95532_0
> twisted-22.2.0-py310h2bbff1b_1
> twisted-iocpsupport-1.0.2-py310h2bbff1b_0
> typing-extensions-4.4.0-py310haa95532_0
> typing_extensions-4.4.0-py310haa95532_0
> unidecode-1.2.0-pyhd3eb1b0_0
> w3lib-1.21.0-pyhd3eb1b0_0
> watchdog-2.1.6-py310haa95532_0
> wcwidth-0.2.5-pyhd3eb1b0_0
> webencodings-0.5.1-py310haa95532_1
> websocket-client-0.58.0-py310haa95532_4
> werkzeug-2.2.2-py310haa95532_0
> whatthepatch-1.0.2-py310haa95532_0
> widgetsnbextension-3.5.2-py310haa95532_0
> winpty-0.4.3-4
> wrapt-1.14.1-py310h2bbff1b_0
> xarray-2022.11.0-py310haa95532_0
> xlwings-0.29.1-py310haa95532_0
> yapf-0.31.0-pyhd3eb1b0_0
> zeromq-4.3.4-hd77b12b_0
> zfp-0.5.5-hd77b12b_6
> zict-2.1.0-py310haa95532_0
> zipp-3.11.0-py310haa95532_0
> zope-1.0-py310haa95532_1
> zope.interface-5.4.0-py310h2bbff1b_0
>
> The following packages will be UPDATED:
>
> beautifulsoup4 4.11.1-py310haa95532_0 --> 4.12.2-py310haa95532_0
> conda 23.3.1-py310haa95532_0 --> 23.5.0-py310haa95532_0
> jupyter_core 5.2.0-py310haa95532_0 --> 5.3.0-py310haa95532_0
> libarchive 3.6.2-hebabd0d_0 --> 3.6.2-h2033e3e_1
> libclang 12.0.0-default_h627e005_2 --> 14.0.6-default_hb5a9fac_1
> libffi 3.4.2-hd77b12b_6 --> 3.4.4-hd77b12b_0
> libxml2 2.9.14-h0ad7f3c_0 --> 2.10.3-h0ad7f3c_0
> libxslt 1.1.35-h2bbff1b_0 --> 1.1.37-h2bbff1b_0
> navigator-updater 0.3.0-py310haa95532_0 --> 0.4.0-py310haa95532_0
> packaging 22.0-py310haa95532_0 --> 23.0-py310haa95532_0
> qt-main 5.15.2-he8e5bd7_7 --> 5.15.2-he8e5bd7_8
> qtwebkit 5.212-h3ad3cdb_4 --> 5.212-h2bbfb41_5
> requests 2.28.1-py310haa95532_0 --> 2.29.0-py310haa95532_0
> soupsieve 2.3.2.post1-py310haa95532_0 --> 2.4-py310haa95532_0
> sqlite 3.40.1-h2bbff1b_0 --> 3.41.2-h2bbff1b_0
> tornado 6.1-py310h2bbff1b_0 --> 6.2-py310h2bbff1b_0
> tqdm 4.64.1-py310haa95532_0 --> 4.65.0-py310h9909e9c_0
> tzdata 2022g-h04d1e81_0 --> 2023c-h04d1e81_0
> urllib3 1.26.14-py310haa95532_0 --> 1.26.16-py310haa95532_0
> xz 5.2.10-h8cc25b3_1 --> 5.4.2-h8cc25b3_0
> zstd 1.5.2-h19a0ad4_0 --> 1.5.5-hd43e919_0
>
>
> Proceed ([y]/n)? y
>
>
> Downloading and Extracting Packages
> urllib3-1.26.16 | 202 KB | ############################################################################ | 100%
> tzdata-2023c | 116 KB | ############################################################################ | 100%
> libclang-14.0.6 | 154 KB | ############################################################################ | 100%
> qtwebkit-5.212 | 11.6 MB | ############################################################################ | 100%
> libclang13-14.0.6 | 22.5 MB | ############################################################################ | 100%
> libxslt-1.1.37 | 448 KB | ############################################################################ | 100%
> packaging-23.0 | 70 KB | ############################################################################ | 100%
> tqdm-4.65.0 | 149 KB | ############################################################################ | 100%
> sqlite-3.41.2 | 894 KB | ############################################################################ | 100%
> soupsieve-2.4 | 70 KB | ############################################################################ | 100%
> libxml2-2.10.3 | 2.9 MB | ############################################################################ | 100%
>
> Preparing transaction: done
> Verifying transaction: done
> Executing transaction: done
[noutput] Retrying conda env create -f environment.yml did not give a warning about conda, but it didn't resolve the error either. The following [output] comes from this attempt.
> Collecting package metadata (repodata.json): done
> Solving environment: done
>
> Downloading and Extracting Packages
>
>
> InvalidArchiveError('Error with archive C:\\Users\\David\\anaconda3\\pkgs\\jupyterlab_html-v0.1.0-0.tar.bz2. You probably need to delete and re-download or re-create this file. Message was:\n\nfailed with error: seeking backwards is not allowed')
[Edit] Made a separate issue to help break down the process of resolving an issue like that in #5.