Closed JustinChu closed 5 years ago
Minimap2 can produce better gapped alignments than bwa mem, necessitating the use of scafftig splitting (as well as an agp file). It may be possible to generate an alignment with Minimap2 over the whole scaffold instead.
Minimap2 can produce better gapped alignments than bwa mem, necessitating the use of scafftig splitting (as well as an agp file). It may be possible to generate an alignment with Minimap2 over the whole scaffold instead.