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JustinChu / JupiterPlot

A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
GNU General Public License v3.0
68 stars 11 forks source link

Change color of the output and replot #19

Closed scintilla9 closed 5 years ago

scintilla9 commented 5 years ago

Hi allI,

I am wondering if there's a simple way to change the color and replot the picture? I try to modify the config file, however I noticed that in the end of the pipeline, the config file would be removed. Is there any suggestions? Thanks!

JustinChu commented 5 years ago

The colours are determined in the karyotype stage so if you run the pipeline to that stage and edit the file you can set the colours yourself. In the karyotype file change the colours and run the full pipeline.

jupiter name=prefix $OPTS prefix.karyotype
gedit prefix.karyotype #Manually change the files
jupiter name=prefix $OPTS

This is very similar to issue #18

scintilla9 commented 5 years ago

Thanks for the explanation!