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JustinChu / JupiterPlot

A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
GNU General Public License v3.0
68 stars 11 forks source link

Can I retain some config files removed by your script? #41

Closed nzx9581 closed 6 months ago

nzx9581 commented 1 year ago

Hi Developer, I am wondering how can I keep configure files that are removed at the last step of your script, which shows the information like that: rm test.rv.links.bundled test.fw.links.bundled test.conf test.fw.links.bundled.flipped I checked jupiter script, however, I found that you didn't use rm command in bash to delete these files. So I guess you remove these files in your perl scripts, but I don't know which one is the right one that I should modify. Can you tell me how to do that? Thanks in advance.

JustinChu commented 12 months ago

Sorry for the late reply but the files are removed by make, if you want to retain them you can run the makefile and just specify the filenames to retain.

JustinChu commented 6 months ago

For example jupiter name=test ref="dros.fa" fa="drosScaf.fa" test.rv.links.bundled test.fw.links.bundled test.conf test.fw.links.bundled.flipped should retain the files.