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JustinChu / JupiterPlot

A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
GNU General Public License v3.0
68 stars 11 forks source link

Labels #47

Open aebaci opened 2 months ago

aebaci commented 2 months ago

Hi, Thank you for your tool! I was hoping to keep the original labels of the files (at least of the reference), but the resulting images cut part of them (see attached). Is there any way to fix this issue in the jupiterplot code? SPg300Pgcomp_100M1000G Thanks.

JustinChu commented 2 months ago

The pipeline essentially uses a base circos configuration file. Changing values like: https://github.com/JustinChu/JupiterPlot/blob/215dd386797252fe928e60745529939649787c4b/jupiterplot/config/rawConf.conf#L13 https://github.com/JustinChu/JupiterPlot/blob/215dd386797252fe928e60745529939649787c4b/jupiterplot/config/rawConf.conf#L23

should help you get what you need but it will take some tweaking of this file to get it right exactly.

JustinChu commented 2 months ago

Also, rather than altering the master file altering the prefix.conf file produced and re-running the rendering step is probably the way to go.