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JustinChu / JupiterPlot

A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
GNU General Public License v3.0
68 stars 11 forks source link

Allow for scaffold names to be printed using an option #7

Closed JustinChu closed 6 years ago

JustinChu commented 7 years ago

Currently if you alter https://github.com/JustinChu/JupiterPlot/blob/master/config/rawConf.conf#L29 to prevent masking of the placeholder names. Then you can convert them using the prefix.scaffold.txt file but this should be made a lot easier for diagnostic purposes.

JustinChu commented 7 years ago

prefix.scaffold is retired and is supplanted by prefix.seqOrder.txt.