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Jylau14 / hyb2

A program for analyzing proximity ligation experiments from mapped files in the Fastq or SAM format to 1) generate a list of chimeric interactions with their coordinates, sequence, and folding energy, 2) plot contact density map of selected genes, 3) generate intra-/intermolecular RNA structure of any selected regions
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Command line help message #3

Closed mwhamgenomics closed 1 year ago

mwhamgenomics commented 1 year ago

It's common for command line tools to have a help message showing what arguments the executable takes, e.g. by running with no arguments or running with --help or -h. At the moment there's no option for this - if I run bin/hyb2 with no options, the executable hangs indefinitely. It would be nice to have a default help message that shows if:

Jylau14 commented 1 year ago

Now echos "No options selected" and exits when no arguments are specified to prevent it from hanging indefinitely.