When I run ClinSV, errors has happened.
The command is :
docker run -v /project/ShareJH/Clinsv/clinsv/:/app/ref-data -v /project/JX1/04.sv/WGS1/:/app/project_folder -v /project/JX1/01.alignment/WGS1/:/app/input --entrypoint "perl" mrbradley2/clinsv:v1.1-dev /app/clinsv/bin/clinsv -r all -p /app/project_folder/ -i "/app/input/*.bam" -ref /app/ref-data/refdata-b38
When I run ClinSV, errors has happened. The command is : docker run -v /project/ShareJH/Clinsv/clinsv/:/app/ref-data -v /project/JX1/04.sv/WGS1/:/app/project_folder -v /project/JX1/01.alignment/WGS1/:/app/input --entrypoint "perl" mrbradley2/clinsv:v1.1-dev /app/clinsv/bin/clinsv -r all -p /app/project_folder/ -i "/app/input/*.bam" -ref /app/ref-data/refdata-b38
clinsv/ ├── refdata-b37 └── refdata-b38
/project/JX1/01.alignment/WGS1/ ├── WGS1.sort.dup.bam └── WGS1.sort.dup.bam.bai
error is:
executing: sh /app/project_folder/SVs/joined/sh/annotate.main.joined.sh &> /app/project_folder/SVs/joined/sh/annotate.main.joined.e ...
finished after (hh:mm:ss): 00:00:07
exist status: 6400
***** error exist status != 0 (6400), please check /app/project_folder/SVs/joined/sh/annotate.main.joined.e for more information
annotate.main.joined.e file is :
How to solve it?