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KCCG / mity

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
MIT License
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--region MT:1-500 #19

Closed Pharmacogenetecist closed 5 months ago

Pharmacogenetecist commented 2 years ago

Is it possible to assess the entire MT region 1 - 16569 ?

I tried it and got an "IndexError: list assignment index out of range"

I believe this is coming from the --normalise command. However, I believe this is required if going onto generating a report.

drmjc commented 2 years ago

Don't specify the - - region

On Fri, 7 Oct 2022, 3:53 am Simran Maggo, @.***> wrote:

Is it possible to assess the entire MT region 1 - 16569 ?

I tried it and got an "IndexError: list assignment index out of range"

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Pharmacogenetecist commented 2 years ago

Don't specify the - - region …

When not specifying a region, I still get the same error with the --normalise.

Pharmacogenetecist commented 2 years ago

Don't specify the - - region … On Fri, 7 Oct 2022, 3:53 am Simran Maggo, @.> wrote: Is it possible to assess the entire MT region 1 - 16569 ? I tried it and got an "IndexError: list assignment index out of range" — Reply to this email directly, view it on GitHub <#19>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAEQQMZXN2JUJV77VS5HVCDWB37ZXANCNFSM6AAAAAAQ62GJIQ . You are receiving this because you are subscribed to this thread.Message ID: @.>

The error seems to come about when using --normalise. If I do not specify a region + --normalise = error If I do not specify a region - --normalise = no error.

trentzz commented 5 months ago

Hi, the issues you've mentioned should be resolved in the new release of Mity 1.1.0. If you encounter any further problems, please feel free to open a new issue. Thanks!