Slicer remains still while trying to convert the dicoms to nifti

KCL-BMEIS / VS_Seg

Automatic Segmentation of Vestibular Schwannoma with MONAI (PyTorch)

Apache License 2.0

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Slicer remains still while trying to convert the dicoms to nifti #8

Closed Hoda1394 closed 9 months ago

Hoda1394 commented 1 year ago

I am following the instructions in the preprocessing folder to convert the data to Nifti but it does not work. I am using slicer 5.2.2 on mac os. and the slicer remains still and does nothing after giving these outputs,

Switch to module:  "Welcome"
['1']
case: 1
> <string>(440)main()

any idea what maybe wrong?

aaronkujawa commented 1 year ago

Hi, Sorry, I don't know what went wrong. I just tested it again on Slicer5.2.1. What is the full command you run? The input-path is the output from the previous script, TCIA_data_convert_into_convenient_folder_structure.py ?

Hoda1394 commented 1 year ago

Hi, Thanks for the reply. yes, the input path is the output of the TCIA_data_convert_into_convenient_folder_structure.py. I am going to try to remove everything and try it again from the beginning. Hope it will work.