KCL-BMEIS / niftyreg

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities
BSD 3-Clause "New" or "Revised" License
139 stars 41 forks source link

reg_aladin v1.3.9 and v1.5.58 discrepancy #35

Open mmodat opened 6 years ago

mmodat commented 6 years ago

In gitlab by @rmharbr on Apr 17, 2018, 16:34

Using the executable reg_aladin, I notice a large discrepancy between v1.3.9 & v.1.5.58 (most recent pull) in the registration of some head images. As I'm dealing with head images, I'm using the -rigOnly flag.

I'm experiencing this problem for multiple PET frames (longitudinal), as well as multimodal registration between an MR and PET image.

Strangely, v1.3.9 seems to perform the registration correctly (the output image is nicely superposed on the reference image in Slicer). With v1.5.58, although the output image moves closer to the reference image, it is still poorly aligned. The required rigid transformation is largely a translation in the z-direction, so it is easy to qualitatively say which one is better.

Is there anything I'm missing when upgrading the version of NiftyReg? I know that by default symmetric aladin is now used, but whether I use symmetric or non-symmetric, the old version seems to give better results.

mmodat commented 6 years ago

In gitlab by @rmharbr on Apr 17, 2018, 16:41

changed title from reg_aladin v1.3.9 and v1.5 discrepancy to reg_aladin v1.3.9 and v1.5{+.58+} discrepancy

mmodat commented 6 years ago

In gitlab by @rmharbr on Apr 17, 2018, 16:41

changed the description