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KChen-lab / MEDALT

Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
MIT License
16 stars 2 forks source link

example outputRNA not the same as yours #4

Open hoyu310 opened 3 years ago

hoyu310 commented 3 years ago

Hi, thanks for the nice tool, I want to try it on some scRNA-seq CNV data. I ran your example that uses "scRNA.CNV.txt", outputs to the "outputRNA" folder. I found both the singlecell.tree and LSA.tree outputs to be a bit similar but also clearly different to your provided ones in the pre-existing "outputRNA" folder. I ran it with python 2.7.16 and R 4.0.4 (I don't have the option to downgrade to 3.5) and it ran without any errors. I ran it twice and got the exact same outputs. Here are my outputs: image image

Are some differences expected since some of the scripts have been updated in the recent months? Thanks

ktessema commented 3 years ago

Same here, using R 4.0.3. Did you figure out the reason, @hoyu310 ?