Closed ayavuzcakir closed 1 year ago
Hi, Monopogen uses the function pysam.AlignmentFile to load the bam files. The open function opens the bam file list (not the bam files). Would you mind share with me a subset of your bam files so that I can examine what happens inside?
Hi, Monopogen uses the function pysam.AlignmentFile to load the bam files. The open function opens the bam file list (not the bam files). Would you mind share with me a subset of your bam files so that I can examine what happens inside?
Oh my bad, I somehow thought I could input a bam file directly :/ Now I tried with a .lst file and then worked! Thank you for your reply!
I wanted to try Monopogen on my GEX-cellranger output, first started with preprocess.py, however, it directly gave me the following error;