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KChen-lab / Monopogen

SNV calling from single cell sequencing
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Monopogen for mouse single cell sequence #22

Closed Lixinyoung closed 4 months ago

Lixinyoung commented 12 months ago

Can Monopogen be applied to Mus musculus or any other species? If it is able to do it, can you show me how to do it? Like where I can prepare the WGS.vcf file. If it is unable to do it, would you like to add this expansion on your to-do-list?

And which column Monopogen use to identify the single cell barcode?(My data do not have CR or CB column. )

Thank you.

jinzhuangdou commented 11 months ago

Monopogen is not able to call SNVs on mouse species. It depends on the 1KG3 panel (only available for human)