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KChen-lab / Monopogen

SNV calling from single cell sequencing
GNU General Public License v3.0
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bam.lst file format #62

Open aidanshoham12 opened 2 months ago

aidanshoham12 commented 2 months ago

Hello! Im having a bit of difficulty generating the bam.lst file that will be used for data preprocessing. I had made my bam.lst file containing the paths to the bam files (both of then A.bam and B,bam) provided in the example directory in the following way:

${path}/example/A.bam,
${path}/example/B.bam,

However, it seems like the Bam file isn't able to be found from the following error message: AssertionError: Bam file cannot be found! I was wondering if you would be able to clarify the format of the bam.lst file needed by the software and whether I am simply able to provide the path to the example directory inside the bam.lst file. Thank you for your help!

jinzhuangdou commented 1 month ago

You can find the bam.lst in test/bam.lst.