Open twoneu opened 1 year ago
There is an option --region in which you can specify multiple chromosomes. You can set region.lst as following to run 22 chromosomes at the same time.
region.lst chr1 chr2 chr3 ... chr22
Hello,jinzhuangdou
-g REFERENCE, --reference REFERENCE
The human genome reference used for alignment
When I set the region.lst content to chr1-22, how do I specify the reference?
Hello all,
Thank you for making this great tool. In the example, the germline caller is used for chromosome 20 only. If we wish to perform germline calling for chromosomes 1-22 for a single sample, do we need to run the germline caller 22 times? Or is there a way to input multiple fasta files that correspond to the different chrs?