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KChen-lab / Monopogen

SNV calling from single cell sequencing
GNU General Public License v3.0
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Error due to md5sum of 1000G_phased vcf.gz #78

Closed chadohyeon closed 1 month ago

chadohyeon commented 1 month ago

Thank you for the great work first.

My script for phasing is working for chr1, 2, 7, 8, 10, and 16, but not for the other chromosomes.

Only these 6 chromosomes have identical md5sum values with the 1000G dataset. I've tried re-downloading other chromosomes with wget, curl -O, and axel, but the md5sum is still not identical.

Are there any other resources for these chromosomal vcfs?

chadohyeon commented 1 month ago

I fixed the issue by "rsync" the 1000G phased vcf.gz files. Thanks!