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KHP-Informatics / ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
GNU General Public License v2.0
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NGSeasy Calling issue #25

Open belhocine13 opened 8 years ago

belhocine13 commented 8 years ago

Hello

I am a beginner in programing I just installed the tool successfully and I even realize the test and observe the VCF output But after closing the terminal I wanted to come back and start a to run with my own data and then I receive an error that I do not understand

Calling ngseasy_trimmomatic / Bin / bash: ngseasy_trimmomatic: No such file or directory Calling ngseasy_alignment / Bin / bash: ngseasy_alignment: No such file or directory Calling ngseasy_realn / Bin / bash: ngseasy_realn: No such file or directory Calling ngseasy_bsqr / Bin / bash: ngseasy_bsqr: No such file or directory Calling ngseasy_variant_calling / Bin / bash: ngseasy_variant_calling: No such file or directory

can you please Help me

Best

snewhouse commented 8 years ago

Hi @belhocine13

can you let me know what version of Docker you are running, OS you are using (Mac/Linux?) etc and can you reproduce the error and share some screen shots?

in the command line type which ngseasy_trimmomatic and let me know what the ouput is.

Cheers

Steve