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KVSlab / VaMPy

A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.
https://kvslab.github.io/VaMPy
GNU General Public License v3.0
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Running CFD from documentation #150

Closed lshahid closed 4 months ago

lshahid commented 4 months ago

Hello,

I am just getting started with VaMPy. I was following the documentation and got stuck when running CFD. These are the issues I am facing.

I tried to run CFD with VaMPy's conda environment and run the command oasis NSfracStep problem=Artery mesh_path=../../../models/artery/artery.xml.gz save_solution_after_cycle=0, this is the error I get.

Screen Shot 2024-06-17 at 4 35 34 PM

Then I tried to use OasisMove with the command oasismove NSfracStepMove problem=Artery dynamic_mesh=False mesh_path=../../../models/artery/artery.xml.gz save_solution_after_cycle=0, but it says zsh: command not found: oasismove. This leads me to use the OasisMove conda environment instead of VaMPy. But I get this error message if I do that.

Screen Shot 2024-06-17 at 4 42 52 PM

If I run the command oasismove NSfracStepMove problem=Artery dynamic_mesh=False mesh_path=../../../models/artery/artery.xml.gz save_solution_after_cycle=0 VaMPy's Docker container, it again says that oasismove is not found. The same error is shown when I use oasis in VaMPy's container.

image

If I use OasisMove's Docker container, it gives the error ModuleNotFoundError: No module named 'vampy'. Is there a way to build an OasisMove docker image that has VaMPy available?

Thanks, Labib