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Kalan-Lab
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lsaBGC
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
BSD 3-Clause "New" or "Revised" License
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Update to v1.50
#29
raufs
closed
11 months ago
0
get updated dockerfiles from main
#28
raufs
closed
1 year ago
0
Updated db downloading
#27
raufs
closed
1 year ago
0
setup_annotation_dbs.py error
#26
HirokiK0
closed
1 year ago
3
Update to v1.39
#25
raufs
closed
1 year ago
0
Update to v1.38: Incorporation of SonicParanoid2
#24
raufs
closed
1 year ago
0
Update to v1.37.1
#23
raufs
closed
1 year ago
0
pull from main
#22
raufs
closed
1 year ago
0
Push v1.37 from develop branch to main
#21
raufs
closed
1 year ago
0
Develop Docker Image
#20
raufs
closed
1 year ago
2
Issues with lsaBGC: setup_annotation_dbs.py and Primary_Sample_Annotation_Files.txt (lsaBGC-Easy.py)
#19
Sam-Will
closed
1 year ago
6
Pull changes for v1.34
#18
raufs
closed
1 year ago
0
Pull recent updates to logging
#17
raufs
closed
1 year ago
0
update lsaBGC-Easy workflow + other slight changes
#16
raufs
closed
2 years ago
0
add considerations to lsaBGC-Easy help + patch Genome_Wide mode fix
#15
raufs
closed
2 years ago
0
update yaml
#14
raufs
closed
2 years ago
0
Unable to produce pdf files
#13
devarajarun
closed
1 year ago
7
update GECCO Genbank processing to ID protocore-esque genes + simplified documentation on PopGene report table
#12
raufs
closed
2 years ago
0
Update GECCO parsing code to avoid reading files more than once
#11
althonos
closed
2 years ago
5
Update plotBigPictureHeatmap.R
#10
raufs
closed
2 years ago
0
correct issue with sample exclusion due to loss in tree making process
#9
raufs
closed
2 years ago
0
Update test case
#8
raufs
closed
2 years ago
0
update test case
#7
raufs
closed
2 years ago
0
Major Update 07/10
#6
raufs
closed
2 years ago
0
update + loose mode for expansion
#5
raufs
closed
2 years ago
0
Introduce MAGUS for protein alignments and Catches for OrthoFinder2 analysis in lsaBGC-Ready.py
#4
raufs
closed
2 years ago
0
Merge pull request #1 from Kalan-Lab/main
#3
raufs
closed
2 years ago
0
Fix bugs in lsaBGC-Ready.py, introduce some useful scripts + have lsaBGC-AutoExpansion work for reassessing primary genomes
#2
raufs
closed
2 years ago
0
merge updates to lsaBGC-Ready.py
#1
raufs
closed
2 years ago
0