Missing rs ID and south asian allele frequency

KalinNonchev / gnomAD_DB

This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

MIT License

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Missing rs ID and south asian allele frequency #33

Closed shubham1637 closed 3 months ago

shubham1637 commented 3 months ago

Hi, I am using gnomad_db_v3.1.2, however I find that sqlite3 table has very limited information. It doesn't have rs id or sas allele frequency. Is there a way to get this info? should I use different database?

KalinNonchev commented 3 months ago

Hello @shubham1637 , thank you for your question. We provide only the most used annotations to keep the database size small. It is possible to include all the attributes you would need by running this pipeline. You should add the attributes of interest here.

Please let me know if you have further questions.

Best,