query all variants and minor allele frequency for given chromosome

KalinNonchev / gnomAD_DB

This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

MIT License

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query all variants and minor allele frequency for given chromosome #5

Closed KalinNonchev closed 2 years ago

KalinNonchev commented 3 years ago

idea from https://github.com/broadinstitute/gnomad-browser/issues/713

such as

db.get_mafs_for_interval(chrom=21, query="AF")