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KamilSJaron / smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data
Apache License 2.0
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issue about smudge_pairs #119

Closed linshengnan09 closed 1 year ago

linshengnan09 commented 1 year ago

What did you do

Tell us about the problem. what is the version of the software you used (smudgeplot -v)? What was the input (possibly with a few example lines)? What is the command you run? What is the error output you get? And what you have expected to see instead? hi，I couldn't get the smudge_pairs subroutine in KMC.

KamilSJaron commented 1 year ago

Hi, sorry to hear that, but without more info, there is no way we can help you...

linshengnan09 commented 1 year ago

As the issue "Killed process on smudgeplot hetkmers #77", I want to install tbenavi1/KMC with smudge_pairs to solve this problem.Unfortunately, I didn't get the smudge_pairs when I installed tbenavi1/KMC.

KamilSJaron commented 1 year ago

What did you try to do to install it? Did you try something like:

make smudge_pairs

that should give you some sort of log, if the log has an error, what error it is?

Anyway, I can't help you much with the little effort you put in reporting the problem. If would like to get some help you need to be A LOT more verbose - describe what system you have (if relevant), what exactly you tried to do (the commands you executed, not "install the software"), what was error you got...