search

KamilSJaron / smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data
Apache License 2.0
223 stars 24 forks source link

PloidyPlot: Table part ./.finall.ktab.1 is missing ? #154

Open GLking123 opened 1 month ago

GLking123 commented 1 month ago

Hi,

I attempted the new FastK. I ran multiple datasets separately and then used Fastmerge for the final combination.

The commands are as follows:

FastK -v -t4 -k31 -T20 -P$outdir -M20 -N$outdir $sourecedir

Fastmerge -ht -T100 -P$outdir finall 01 02 03 04 05 06 07 08 09 10 11 12 13 14 16

image

However, when running PloidyPlot -e4 -k -v -T50 -o$outdir finall, an error occurs. PloidyPlot: Table part ./.finall.ktab.1 is missing ?

For the above question, could you provide some suggestions? Thank you for your valuable time and assistance. I sincerely look forward to your response！

KamilSJaron commented 1 month ago

Good question. Gene, can you run PloidyPlot algorithm on fast merged files @thegenemyers?