Closed KangchengHou closed 2 years ago
Instead of using zarr as the engine, consider using plink2
It should support random access, see https://github.com/chrchang/plink-ng/tree/master/2.0/Python
the big advantage of it is it can enjoy so many usage of plink2
To check whether plink2 support storing phasing information.
Other than this, we can have another file to store local ancestries.
The first step may be to implement similar functions with pandas-plink
Instead of using zarr as the engine, consider using plink2
It should support random access, see https://github.com/chrchang/plink-ng/tree/master/2.0/Python
the big advantage of it is it can enjoy so many usage of plink2
To check whether plink2 support storing phasing information.
Other than this, we can have another file to store local ancestries.
The first step may be to implement similar functions with pandas-plink