Open Arslan-Zaidi opened 2 days ago
The seed in haptools-simu-admix is always 1234 and cannot be specified by the user. This leads to the simulation to output the same haplotypes every time. I haven't tried it with the other tools within admix-kit.
admix haptools-simu-admix \ --pfile ceu.yri/1kg_hm3_chr2 \ --mapdir ~/lab/shared/recomb_maps/beagle_GRCH38/ \ --admix-prop '{"CEU": 0.5, "YRI": 0.5}' \ --pop-col Population \ --n-gen ${g} \ --n-indiv 5000 \ --out admix/pgen/admix_HIg${g}${rep}
Screenshots
The seed in haptools-simu-admix is always 1234 and cannot be specified by the user. This leads to the simulation to output the same haplotypes every time. I haven't tried it with the other tools within admix-kit.
admix haptools-simu-admix \ --pfile ceu.yri/1kg_hm3_chr2 \ --mapdir ~/lab/shared/recomb_maps/beagle_GRCH38/ \ --admix-prop '{"CEU": 0.5, "YRI": 0.5}' \ --pop-col Population \ --n-gen ${g} \ --n-indiv 5000 \ --out admix/pgen/admix_HIg${g}${rep}
Screenshots