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KanishkNavale / DIEM

Dimension Insensitive Euclidean Metric (DIEM)
GNU Affero General Public License v3.0
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Deps: Bump the python-packages group across 1 directory with 11 updates #7

Closed dependabot[bot] closed 4 weeks ago

dependabot[bot] commented 1 month ago

Bumps the python-packages group with 11 updates in the / directory:

Package From To
torch 2.4.0 2.4.1
numpy 1.26.4 2.0.2
pontos 24.3.2 24.9.0
anyio 4.4.0 4.6.0
filelock 3.15.4 3.16.1
fsspec 2024.6.1 2024.9.0
idna 3.8 3.10
platformdirs 4.2.2 4.3.6
rich 13.8.0 13.8.1
ruff 0.6.3 0.6.8
sympy 1.13.2 1.13.3

Updates torch from 2.4.0 to 2.4.1

Release notes

Sourced from torch's releases.

PyTorch 2.4.1 Release, bug fix release

This release is meant to fix the following issues (regressions / silent correctness):

Breaking Changes:

  • The pytorch/pytorch docker image now installs the PyTorch package through pip and has switch its conda installation from miniconda to miniforge (#134274)

Windows:

  • Fix performance regression on Windows related to MKL static linking (#130619) (#130697)
  • Fix error during loading on Windows: [WinError 126] The specified module could not be found. (#131662) (#130697)

MPS:

  • Fix tensor.clamp produces wrong values (#130226)
  • Fix Incorrect result from batch norm with sliced inputs (#133610)

ROCM:

  • Fix for launching kernel invalid config error when calling embedding with large index (#130994)
  • Added a check and a warning when attempting to use hipBLASLt on an unsupported architecture (#128753)
  • Fix image corruption with Memory Efficient Attention when running HuggingFace Diffusers Stable Diffusion 3 pipeline (#133331)

Distributed:

  • Fix FutureWarning when using torch.load internally (#130663)
  • Fix FutureWarning when using torch.cuda.amp.autocast internally (#130660)

Torch.compile:

  • Fix exception with torch compile when onnxruntime-training and deepspeed packages are installed. (#131194)
  • Fix silent incorrectness with torch.library.custom_op with mutable inputs and torch.compile (#133452)
  • Fix SIMD detection on Linux ARM (#129075)
  • Do not use C++20 features in cpu_inducotr code (#130816)

Packaging:

  • Fix for exposing statically linked libstdc++ CXX11 ABI symbols (#134494)
  • Fix error while building pytorch from source due to not missing QNNPACK module (#131864)
  • Make PyTorch buildable from source on PowerPC (#129736)
  • Fix XPU extension building (#132847)

Other:

  • Fix warning when using pickle on a nn.Module that contains tensor attributes (#130246)
  • Fix NaNs return in MultiheadAttention when need_weights=False (#130014)
  • Fix nested tensor MHA produces incorrect results (#130196)
  • Fix error when using torch.utils.flop_counter.FlopCounterMode (#134467)

Tracked Regressions:

  • The experimental remote caching feature for Inductor's autotuner (enabled via TORCHINDUCTOR_AUTOTUNE_REMOTE_CACHE) is known to still be broken in this release and actively worked on in main. Following Error is generated: redis.exceptions.DataError: Invalid input of type: 'dict'. Please use nightlies if you need this feature (reported and Fixed by PR: #134032)

Release tracker #132400 contains all relevant pull requests related to this release as well as links to related issues.

Commits


Updates numpy from 1.26.4 to 2.0.2

Release notes

Sourced from numpy's releases.

NumPy 2.0.2 release (Aug 26, 2024)

NumPy 2.0.2 Release Notes

NumPy 2.0.2 is a maintenance release that fixes bugs and regressions discovered after the 2.0.1 release.

The Python versions supported by this release are 3.9-3.12.

Contributors

A total of 13 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Bruno Oliveira +
  • Charles Harris
  • Chris Sidebottom
  • Christian Heimes +
  • Christopher Sidebottom
  • Mateusz Sokół
  • Matti Picus
  • Nathan Goldbaum
  • Pieter Eendebak
  • Raghuveer Devulapalli
  • Ralf Gommers
  • Sebastian Berg
  • Yair Chuchem +

Pull requests merged

A total of 19 pull requests were merged for this release.

  • #27000: REL: Prepare for the NumPy 2.0.1 release [wheel build]
  • #27001: MAINT: prepare 2.0.x for further development
  • #27021: BUG: cfuncs.py: fix crash when sys.stderr is not available
  • #27022: DOC: Fix migration note for alltrue and sometrue
  • #27061: BUG: use proper input and output descriptor in array_assign_subscript...
  • #27073: BUG: Mirror VQSORT_ENABLED logic in Quicksort
  • #27074: BUG: Bump Highway to latest master
  • #27077: BUG: Off by one in memory overlap check
  • #27122: BUG: Use the new npyv_loadable_stride_ functions for ldexp and...
  • #27126: BUG: Bump Highway to latest
  • #27128: BUG: add missing error handling in public_dtype_api.c
  • #27129: BUG: fix another cast setup in array_assign_subscript
  • #27130: BUG: Fix building NumPy in FIPS mode
  • #27131: BLD: update vendored Meson for cross-compilation patches
  • #27146: MAINT: Scipy openblas 0.3.27.44.4
  • #27151: BUG: Do not accidentally store dtype metadata in np.save
  • #27195: REV: Revert undef I and document it
  • #27213: BUG: Fix NPY_RAVEL_AXIS on backwards compatible NumPy 2 builds
  • #27279: BUG: Fix array_equal for numeric and non-numeric scalar types

... (truncated)

Commits
  • 854252d Merge pull request #27280 from charris/prepare-2.0.2
  • cffa071 REL: Prepare for the NumPy 2.0.2 release [wheel build]
  • 1693029 Merge pull request #27279 from charris/backport-27275
  • da9f9c3 BUG: Fix array_equal for numeric and non-numeric scalar types
  • ee1cf96 Merge pull request #27213 from charris/backport-27202
  • 49dec35 BUG: Fix NPY_RAVEL_AXIS on backwards compatible NumPy 2 builds
  • be56ae2 Merge pull request #27195 from charris/backport-27182
  • 75b039c REV: Revert undef I and document it
  • 428e2ba Merge pull request #27151 from charris/backport-27143
  • 451516d BUG: Do not accidentally store dtype metadata in np.save
  • Additional commits viewable in compare view


Updates pontos from 24.3.2 to 24.9.0

Release notes

Sourced from pontos's releases.

pontos 24.9.0

24.9.0 - 2024-09-03

Added

  • single-year flag to command pontos-update-header b7a3bd0
  • ts/tsx to supported files 98e573c
  • Test Scoreboard on one of our public repositories 1ce44fe

Bug Fixes

  • Linting in CI via ruff check 9fc463c

Dependencies

  • Bump the python-packages group with 5 updates (#1041) 04eeac5
  • Bump the python-packages group with 4 updates (#1040) 0a58495
  • Bump the actions group with 2 updates (#1038) 4fdbe3d
  • Bump the python-packages group with 7 updates (#1037) 14bf6c4
  • Bump the actions group with 2 updates c3f80a8
  • Bump the python-packages group with 5 updates 527ddd9
  • Bump the python-packages group with 8 updates 2a4254f
  • Bump the python-packages group with 8 updates 19d9165
  • Bump the python-packages group across 1 directory with 6 updates 45eb696
  • Bump certifi from 2024.6.2 to 2024.7.4 8bf91e9
  • Bump urllib3 from 2.2.1 to 2.2.2 de84c74
  • Bump ruff from 0.4.8 to 0.4.9 in the python-packages group b4a0c81
  • Bump the python-packages group with 4 updates 28d0b2d
  • Bump the python-packages group with 8 updates 99ceaee
  • Bump the python-packages group with 6 updates 72b0391
  • Bump the python-packages group with 3 updates b59331c
  • Bump the python-packages group with 4 updates 84d6ba1
  • Bump the python-packages group with 5 updates 250ebd2
  • Bump the python-packages group with 8 updates 8bce799
  • Bump the python-packages group with 4 updates ca050ba
  • Bump the python-packages group with 3 updates 7447c30
  • Bump idna from 3.6 to 3.7 5a17b04
  • Bump the python-packages group with 3 updates 09b8c1d
  • Bump the python-packages group with 2 updates 87be4a8
  • Bump the python-packages group with 3 updates 8d460a7
Commits
  • 12d5f63 Automatic release to 24.9.0
  • 213e94f Fix loading of NVD API results when there are none (#1039)
  • 04eeac5 Deps: Bump the python-packages group with 5 updates (#1041)
  • 0a58495 Deps: Bump the python-packages group with 4 updates (#1040)
  • 8ceb855 Apply linter formatting
  • e2a3689 Compare years as ints
  • 3f37803 Enable updating existing multi-year license headers with single_year
  • b7a3bd0 Add: single-year flag to command pontos-update-header
  • 139faba Change check for excluded first when updating a file
  • 66efb6d Fix handle IndexError exception
  • Additional commits viewable in compare view


Updates anyio from 4.4.0 to 4.6.0

Release notes

Sourced from anyio's releases.

4.6.0

  • Dropped support for Python 3.8 (as #698 cannot be resolved without cancel message support)
  • Fixed 100% CPU use on asyncio while waiting for an exiting task group to finish while said task group is within a cancelled cancel scope (#695)
  • Fixed cancel scopes on asyncio not propagating CancelledError on exit when the enclosing cancel scope has been effectively cancelled (#698)
  • Fixed asyncio task groups not yielding control to the event loop at exit if there were no child tasks to wait on
  • Fixed inconsistent task uncancellation with asyncio cancel scopes belonging to a task group when said task group has child tasks running

4.5.0

  • Improved the performance of anyio.Lock and anyio.Semaphore on asyncio (even up to 50 %)
  • Added the fast_acquire parameter to anyio.Lock and anyio.Semaphore to further boost performance at the expense of safety (acquire() will not yield control back if there is no contention)
  • Added support for the from_uri(), full_match(), parser methods/properties in anyio.Path, newly added in Python 3.13 (#737)
  • Added support for more keyword arguments for run_process() and open_process(): startupinfo, creationflags, pass_fds, user, group, extra_groups and umask (#742)
  • Improved the type annotations and support for PathLike in run_process() and open_process() to allow for path-like arguments, just like subprocess.Popen
  • Changed the ResourceWarning from an unclosed memory object stream to include its address for easier identification
  • Changed start_blocking_portal() to always use daemonic threads, to accommodate the "loitering event loop" use case
  • Bumped the minimum version of Trio to v0.26.1
  • Fixed __repr__() of MemoryObjectItemReceiver, when item is not defined (#767; PR by @​Danipulok)
  • Fixed to_process.run_sync() failing to initialize if __main__.__file__ pointed to a file in a nonexistent directory (#696)
  • Fixed AssertionError: feed_data after feed_eof on asyncio when a subprocess is closed early, before its output has been read (#490)
  • Fixed TaskInfo.has_pending_cancellation() on asyncio not respecting shielded scopes (#771; PR by @​gschaffner)
  • Fixed SocketStream.receive() returning bytearray instead of bytes when using asyncio with ProactorEventLoop (Windows) (#776)
  • Fixed quitting the debugger in a pytest test session while in an active task group failing the test instead of exiting the test session (because the exit exception arrives in an exception group)
  • Fixed support for Linux abstract namespaces in UNIX sockets that was broken in v4.2 (#781 <agronholm/anyio#781>_; PR by @​tapetersen)
  • Fixed KeyboardInterrupt (ctrl+c) hanging the asyncio pytest runner
Changelog

Sourced from anyio's changelog.

Version history

This library adheres to Semantic Versioning 2.0 <http://semver.org/>_.

4.6.0

  • Dropped support for Python 3.8 (as [#698](https://github.com/agronholm/anyio/issues/698) <https://github.com/agronholm/anyio/issues/698>_ cannot be resolved without cancel message support)
  • Fixed 100% CPU use on asyncio while waiting for an exiting task group to finish while said task group is within a cancelled cancel scope ([#695](https://github.com/agronholm/anyio/issues/695) <https://github.com/agronholm/anyio/issues/695>_)
  • Fixed cancel scopes on asyncio not propagating CancelledError on exit when the enclosing cancel scope has been effectively cancelled ([#698](https://github.com/agronholm/anyio/issues/698) <https://github.com/agronholm/anyio/issues/698>_)
  • Fixed asyncio task groups not yielding control to the event loop at exit if there were no child tasks to wait on
  • Fixed inconsistent task uncancellation with asyncio cancel scopes belonging to a task group when said task group has child tasks running

4.5.0

  • Improved the performance of anyio.Lock and anyio.Semaphore on asyncio (even up to 50 %)
  • Added the fast_acquire parameter to anyio.Lock and anyio.Semaphore to further boost performance at the expense of safety (acquire() will not yield control back if there is no contention)
  • Added support for the from_uri(), full_match(), parser methods/properties in anyio.Path, newly added in Python 3.13 ([#737](https://github.com/agronholm/anyio/issues/737) <https://github.com/agronholm/anyio/issues/737>_)
  • Added support for more keyword arguments for run_process() and open_process(): startupinfo, creationflags, pass_fds, user, group, extra_groups and umask ([#742](https://github.com/agronholm/anyio/issues/742) <https://github.com/agronholm/anyio/issues/742>_)
  • Improved the type annotations and support for PathLike in run_process() and open_process() to allow for path-like arguments, just like subprocess.Popen
  • Changed the ResourceWarning from an unclosed memory object stream to include its address for easier identification
  • Changed start_blocking_portal() to always use daemonic threads, to accommodate the "loitering event loop" use case
  • Bumped the minimum version of Trio to v0.26.1
  • Fixed __repr__() of MemoryObjectItemReceiver, when item is not defined ([#767](https://github.com/agronholm/anyio/issues/767) <https://github.com/agronholm/anyio/pull/767>_; PR by @​Danipulok)
  • Fixed to_process.run_sync() failing to initialize if __main__.__file__ pointed to a file in a nonexistent directory ([#696](https://github.com/agronholm/anyio/issues/696) <https://github.com/agronholm/anyio/issues/696>_)
  • Fixed AssertionError: feed_data after feed_eof on asyncio when a subprocess is closed early, before its output has been read ([#490](https://github.com/agronholm/anyio/issues/490) <https://github.com/agronholm/anyio/issues/490>_)

... (truncated)

Commits
  • 8cce749 Bumped up the version
  • 01a37c6 Fixed TaskGroup and CancelScope exit issues on asyncio (#774)
  • 7f35ce7 Bumped up the version
  • 108cc83 [pre-commit.ci] pre-commit autoupdate (#788)
  • d1aea98 Fixed KeyboardInterrupt hanging the asyncio test runner (#779)
  • c1aff53 [pre-commit.ci] pre-commit autoupdate (#785)
  • 89d8b4c Use sphinx_rtd_theme also as an extension
  • 4e9f18d Enabled uvloop to be used in the test suite on Python 3.13
  • 7de6441 Pin Sphinx to a compatible version with sphinx-rtd-theme
  • 41647f4 Fixed feed_data after feed_eof assertion errors on asyncio (#752)
  • Additional commits viewable in compare view


Updates filelock from 3.15.4 to 3.16.1

Release notes

Sourced from filelock's releases.

3.16.1

What's Changed

Full Changelog: https://github.com/tox-dev/filelock/compare/3.16.0...3.16.1

3.16.0

What's Changed

Full Changelog: https://github.com/tox-dev/filelock/compare/3.15.4...3.16.0

Commits


Updates fsspec from 2024.6.1 to 2024.9.0

Commits


Updates idna from 3.8 to 3.10

Changelog

Sourced from idna's changelog.

3.10 (2024-09-15) +++++++++++++++++

  • Reverted to Unicode 15.1.0 data. Unicode 16 has some significant changes to UTS46 processing that will require more work to properly implement.

3.9 (2024-09-13) ++++++++++++++++

  • Update to Unicode 16.0.0
  • Deprecate setup.cfg in favour of pyproject.toml
  • Use ruff for code formatting

Thanks to Waket Zheng for contributions to this release.

Commits


Updates platformdirs from 4.2.2 to 4.3.6

Release notes

Sourced from platformdirs's releases.

4.3.6

What's Changed

Full Changelog: https://github.com/tox-dev/platformdirs/compare/4.3.5...4.3.6

4.3.5

What's Changed

Full Changelog: https://github.com/tox-dev/platformdirs/compare/4.3.4...4.3.5

4.3.4

What's Changed

Full Changelog: https://github.com/tox-dev/platformdirs/compare/4.3.3...4.3.4

4.3.3

What's Changed

New Contributors

Full Changelog: https://github.com/tox-dev/platformdirs/compare/4.3.2...4.3.3

4.3.2

What's Changed

New Contributors

Full Changelog: https://github.com/tox-dev/platformdirs/compare/4.3.1...4.3.2

... (truncated)

Commits


Updates rich from 13.8.0 to 13.8.1

Release notes

Sourced from rich's releases.

The Python 3.13 release

[13.8.1] - 2024-09-10

Fixed

Changelog

Sourced from rich's changelog.

[13.8.1] - 2024-09-10

Fixed

Commits


Updates ruff from 0.6.3 to 0.6.8

Release notes

Sourced from ruff's releases.

0.6.8

Release Notes

Preview features

  • Remove unnecessary parentheses around match case clauses (#13510)
  • Parenthesize overlong if guards in match..case clauses (#13513)
  • Detect basic wildcard imports in ruff analyze graph (#13486)
  • [pylint] Implement boolean-chained-comparison (R1716) (#13435)

Rule changes

  • [lake8-simplify] Detect SIM910 when using variadic keyword arguments, i.e., **kwargs (#13503)
  • [pyupgrade] Avoid false negatives with non-reference shadowed bindings of loop variables (UP028) (#13504)

Bug fixes

  • Detect tuples bound to variadic positional arguments i.e. *args (#13512)
  • Exit gracefully on broken pipe errors (#13485)
  • Avoid panic when analyze graph hits broken pipe (#13484)

Performance

  • Reuse BTreeSets in module resolver (#13440)
  • Skip traversal for non-compound statements (#13441)

Contributors

Install ruff 0.6.8

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.6.8/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

... (truncated)

Changelog

Sourced from ruff's changelog.

0.6.8

Preview features

  • Remove unnecessary parentheses around match case clauses (#13510)
  • Parenthesize overlong if guards in match..case clauses (#13513)
  • Detect basic wildcard imports in ruff analyze graph (#13486)
  • [pylint] Implement boolean-chained-comparison (R1716) (#13435)

Rule changes

  • [lake8-simplify] Detect SIM910 when using variadic keyword arguments, i.e., **kwargs (#13503)
  • [pyupgrade] Avoid false negatives with non-reference shadowed bindings of loop variables (UP028) (#13504)

Bug fixes

  • Detect tuples bound to variadic positional arguments i.e. *args (#13512)
  • Exit gracefully on broken pipe errors (#13485)
  • Avoid panic when analyze graph hits broken pipe (#13484)

Performance

  • Reuse BTreeSets in module resolver (#13440)
  • Skip traversal for non-compound statements (#13441)

0.6.7

Preview features

  • Add Python version support to ruff analyze CLI (#13426)
  • Add exclude support to ruff analyze (#13425)
  • Fix parentheses around return type annotations (#13381)

Rule changes

  • [pycodestyle] Fix: Don't autofix if the first line ends in a question mark? (D400) (#13399)

Bug fixes

  • Respect lint.exclude in ruff check --add-noqa (#13427)

Performance

  • Avoid tracking module resolver files in Salsa (#13437)
  • Use forget for module resolver database (#13438)

0.6.6

Preview features

... (truncated)

Commits
  • ae39ce5 Bump version to 0.6.8 (#13522)
  • ff2d214 Don't skip over imports and other nodes containing nested statements in impor...
  • 9442cd8 Parenthesize match..case if guards (#13513)
  • 8012707 Align formatting of patterns in match-cases with expression formatting in cla...
  • d7ffe46 Disable the typeset plugin (#13517)
  • 7c83af4 red-knot: Implement the not operator for all Type variants (#13432)
  • bbb044e Detect tuples bound to variadic positional arguments i.e. *args (#13512)
  • 4810652 Avoid UP028 false negatives with non-reference shadowed bindings of loop vari...
  • 11f06e0 Detect SIM910 when using variadic keyword arguments, i.e., **kwargs (#13503)
  • f27a8b8 [internal] ComparableExpr (f)strings and bytes made invariant under concate...
  • Additional commits viewable in compare view


Updates sympy from 1.13.2 to 1.13.3

Commits
  • b4ce69a Merge pull request #27081 from oscarbenjamin/pr_113_backport_fixes
  • 575dbfa author: update AUTHORS file
  • 408b571 author: add Matt Wang to .mailmap
  • 77fffbf remove unnecessary parentheses in func role from docstring
  • 2101e6d remove unnecessary parentheses in func role from doc
  • 09f4810 maint(ci): don't use ruff to check files outside sympy
  • 31623f0 release: bump version to 1.13.3
  • 766458c fix(quantum): sympify inputs to clebsch_gordan
  • e34f10e test(stats): fix Markov tests for empty matrices
  • 6db23e6 fix(matrices): Matrix([[], []]) -> Matrix(2, 0, [])
  • See full diff in compare view


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dependabot[bot] commented 4 weeks ago

Looks like these dependencies are updatable in another way, so this is no longer needed.