Symbol triplication in the HTM manual, & updating hyperlinks

[hmedina]

On the HTM manual found at:

http://kappa-dev.github.io/docs/KaSim-manual-master/KaSim_manual.htm

• Most of the symbols got triplicated throughout the file. Unless the syntax has been expanded for such chaining of rules, it now reads for example:

'assumed binary AB'  A(x),B(y)→…→…→… @ γ2γ2γ2

• The link to KappaLanguage.org in the title points to a non-existent page:

http://kappa-dev.github.io/docs/KaSim-manual-master/KappaLanguage.org

• Suggestion: have KaSim's readme.md point to the HTM manual, instead of the page of releases.

[feret]

-> I do have the tripification of the symbols. Is it comming from the browsers ? Which OS and which webbrowser are you using ?

-> I have updated the the link in the KaSim/man

(ignore the rest of the message, I had not noticed that update_web had to be launched by Travis, and it works fine) I have tried to use dev/update-web.sh to push the new version, but it has failed. I usually used the ssh port, do I have do set up something to use the https one ?

[master 7680c54] Sync website with Kappa-Dev/KaSim@00a918a7863f50833be9bb5cb57c66872400eca6 bugfix: size of the logo on the htm version. 9 files changed, 194 insertions(+), 143 deletions(-) rewrite docs/KaSim-manual-master/generated_img/abc_contact.png (99%) rewrite docs/KaSim-manual-master/generated_img/abc_influence.png (98%) rewrite docs/KaSim-manual-master/generated_img/cflow.png (99%) rewrite docs/KaSim-manual-master/generated_img/flux.png (99%) rewrite docs/KaSim-manual-master/generated_img/plot-abc.png (99%) rewrite docs/KaSim-manual-master/generated_img/plot-abc2.png (99%) rewrite docs/KaSim-manual-master/generated_img/poly.png (98%) remote: Anonymous access to Kappa-Dev/Kappa-Dev.github.io.git denied. fatal: Authentication failed for 'https://:@github.com/Kappa-Dev/Kappa-Dev.github.io.git/' No Changes

[hmedina]

The triplication seems to be a browser / OS issue. Firefox on Windows shows triplication; Firefox on Android doesn't; Chrome on Windows doesn't. I've sent Mozilla some feedback on this, don't know if/when they might check on it though.

[pirbo]

I hijack this thread by raising an purely technical point: Am I allowed to provide a static -seed in the man/scripts/_.sh so that the generated images don't change when the documentation don't change ? I ask because else the generatedimg/.png change at each commit in KaSim and the kappa-dev.github.io git repository will soon become gigantic ...

[feret]

@Pierre: You are not allowed. You HAVE to do it !!! All the more so since, we expect the manual to change as less as possible.

[feret]

@Hector, I have noticed some triplification in a transient phase. just after the browser has opened the html file, MathMl expressions are not interpreted properly from the beggining, it takes time to proceed. Maybe in your case, this interpretation has stalled, or has been interrumpted by a bug in the browser.

[hector]

@feret I think you may be writing to another "hector"

[pirbo]

There is something mysterious. At Kappa-Dev/Kappa-Dev.github.io@35d41a7b17257c91c0247e312285535d7df06531 (after last changes of @feret) all symbols have been escaped in html (which is very good !). But after mine, (at Kappa-Dev/Kappa-Dev.github.io@7706bdf3c11895b41b9c4be29a0bf4da97d9f4a5) travis pushes back a version with dangerous symbols. I don't see any reason for that. Do you ?

[feret]

Firstly, it is not fun to laugh at me because github has decided to send email to people I do not know. Secondly, no sorry, I do not know what has cause the conversion of math symbols to html ASCII symbols. You have to understand that I am not clever enough to have it done on purpose..

[vd1]

Dear all

I was trying to compile the latest kasim and got this:

celodv:KaSim V$ make bin/KaSim

ocamlbuild -use-ocamlfind -I KaSa_rep/lib/light KaSim.native

• ocamlfind ocamlopt -c -bin-annot -package str -package unix -I main -I siteGraphs -I simulation -I pattern -I KaSa_rep -I grammar -I Error -I dataStructures -I cflow -I KaSa_rep/tools -I KaSa_rep/sanity_test -I KaSa_rep/reachability_analysis -I KaSa_rep/pipeline -I KaSa_rep/main -I KaSa_rep/lib -I KaSa_rep/influence_map -I KaSa_rep/export_to_KaSim -I KaSa_rep/error_handlers -I KaSa_rep/data_structures -I KaSa_rep/counting_enumeration -I KaSa_rep/config -I KaSa_rep/automatically_generated -I KaSa_rep/lib/light -I KaSa_rep/frontend/preprocess -I KaSa_rep/data_structures/mvbdu -o main/kappa_files.cmx main/kappa_files.ml

File "main/kappa_files.ml", line 1:

Error: Wrong file naming: KaSa_rep/main/filename.cmi

contains the compiled interface for

Filename when FileName was expected

Command exited with code 2.

Compilation unsuccessful after building 108 targets (107 cached) in 00:00:00.

make: *\ [KaSim.native] Error 10

any idea what I am doing wrong?

Vincent

[feret]

Dear Vincent,

This is strange, I have just tested on both Mac OS & Ubuntu and it works properly:

git clone git@github.com:Kappa-Dev/KaSim.git cd KaSim make

Best wishes. Jerome.

---

Jerome Feret DI - Ecole Normale Superieure 45, rue d'Ulm 75230 Paris Cedex 5

phone: +33 1 44 32 37 66 fax : +33 1 44 32 21 51 mail : feret@ens.fr

Le 20 juin 2015 à 20:28, Vincent Danos notifications@github.com a écrit :

Dear all

I was trying to compile the latest kasim and got this:

celodv:KaSim V$ make bin/KaSim

ocamlbuild -use-ocamlfind -I KaSa_rep/lib/light KaSim.native

• ocamlfind ocamlopt -c -bin-annot -package str -package unix -I main -I siteGraphs -I simulation -I pattern -I KaSa_rep -I grammar -I Error -I dataStructures -I cflow -I KaSa_rep/tools -I KaSa_rep/sanity_test -I KaSa_rep/reachability_analysis -I KaSa_rep/pipeline -I KaSa_rep/main -I KaSa_rep/lib -I KaSa_rep/influence_map -I KaSa_rep/export_to_KaSim -I KaSa_rep/error_handlers -I KaSa_rep/data_structures -I KaSa_rep/counting_enumeration -I KaSa_rep/config -I KaSa_rep/automatically_generated -I KaSa_rep/lib/light -I KaSa_rep/frontend/preprocess -I KaSa_rep/data_structures/mvbdu -o main/kappa_files.cmx main/kappa_files.ml

File "main/kappa_files.ml", line 1:

Error: Wrong file naming: KaSa_rep/main/filename.cmi

contains the compiled interface for

Filename when FileName was expected

Command exited with code 2.

Compilation unsuccessful after building 108 targets (107 cached) in 00:00:00.

make: *\ [KaSim.native] Error 10

any idea what I am doing wrong?

Vincent — Reply to this email directly or view it on GitHub https://github.com/Kappa-Dev/KaSim/issues/100#issuecomment-113800794.

[pirbo]

First of all, Have you tried do $ make clean and then $ make bin/KaSim again ?

Pierre B.

Le 20 juin 2015 à 20:28, Vincent Danos notifications@github.com a écrit :

Dear all

I was trying to compile the latest kasim and got this:

celodv:KaSim V$ make bin/KaSim

ocamlbuild -use-ocamlfind -I KaSa_rep/lib/light KaSim.native

• ocamlfind ocamlopt -c -bin-annot -package str -package unix -I main -I siteGraphs -I simulation -I pattern -I KaSa_rep -I grammar -I Error -I dataStructures -I cflow -I KaSa_rep/tools -I KaSa_rep/sanity_test -I KaSa_rep/reachability_analysis -I KaSa_rep/pipeline -I KaSa_rep/main -I KaSa_rep/lib -I KaSa_rep/influence_map -I KaSa_rep/export_to_KaSim -I KaSa_rep/error_handlers -I KaSa_rep/data_structures -I KaSa_rep/counting_enumeration -I KaSa_rep/config -I KaSa_rep/automatically_generated -I KaSa_rep/lib/light -I KaSa_rep/frontend/preprocess -I KaSa_rep/data_structures/mvbdu -o main/kappa_files.cmx main/kappa_files.ml

File "main/kappa_files.ml", line 1:

Error: Wrong file naming: KaSa_rep/main/filename.cmi

contains the compiled interface for

Filename when FileName was expected

Command exited with code 2.

Compilation unsuccessful after building 108 targets (107 cached) in 00:00:00.

make: *\ [KaSim.native] Error 10

any idea what I am doing wrong?

Vincent — Reply to this email directly or view it on GitHub.

[vd1]

ah-ah that worked! thanks Vincent

On 20 June 2015 at 20:46, Pierre Boutillier notifications@github.com wrote:

First of all, Have you tried do $ make clean and then $ make bin/KaSim again ?

Pierre B.

Le 20 juin 2015 à 20:28, Vincent Danos notifications@github.com a écrit :

Dear all

I was trying to compile the latest kasim and got this:

celodv:KaSim V$ make bin/KaSim

ocamlbuild -use-ocamlfind -I KaSa_rep/lib/light KaSim.native

• ocamlfind ocamlopt -c -bin-annot -package str -package unix -I main -I siteGraphs -I simulation -I pattern -I KaSa_rep -I grammar -I Error -I dataStructures -I cflow -I KaSa_rep/tools -I KaSa_rep/sanity_test -I KaSa_rep/reachability_analysis -I KaSa_rep/pipeline -I KaSa_rep/main -I KaSa_rep/lib -I KaSa_rep/influence_map -I KaSa_rep/export_to_KaSim -I KaSa_rep/error_handlers -I KaSa_rep/data_structures -I KaSa_rep/counting_enumeration -I KaSa_rep/config -I KaSa_rep/automatically_generated -I KaSa_rep/lib/light -I KaSa_rep/frontend/preprocess -I KaSa_rep/data_structures/mvbdu -o main/kappa_files.cmx main/kappa_files.ml

File "main/kappa_files.ml", line 1:

Error: Wrong file naming: KaSa_rep/main/filename.cmi

contains the compiled interface for

Filename when FileName was expected

Command exited with code 2.

Compilation unsuccessful after building 108 targets (107 cached) in 00:00:00.

make: *\ [KaSim.native] Error 10

any idea what I am doing wrong?

Vincent — Reply to this email directly or view it on GitHub.

— Reply to this email directly or view it on GitHub https://github.com/Kappa-Dev/KaSim/issues/100#issuecomment-113803330.