Closed hmedina closed 5 years ago
The following model, with extreme parameters, produces a "simulation" that has zero activity, where all rules are dead, where there is nothing to do, and yet the simulation will never end.
Invokation: KaSim -i model.ka -var scale 1e-4
KaSim -i model.ka -var scale 1e-4
Model:
%var: 'Avo' 6.022e23 %var: 'Vol' 2.25e-12 * 'scale' %var: 'AV' 'Avo' * 'Vol' %var: 'A0' 0.07e-9 * 'AV' %var: 'Keq' 1.0e12 %var: 'Γeq' 'Keq' / 'AV' %var: 'k+' 1.0e8 %var: 'γ+' 'k+' / 'AV' %var: 'k-' 'k+' / 'Keq' %var: 'γ-' 'k-' // Xenopus Axin concentration, mammalian volume, picoMolar affinity %agent: A(m, n) %init: 'A0' A() A(m[./1]), A(n[./1]) @ 'γ+' {0} A(m[1/.]), A(n[1/.]) @ 'γ-' %obs: 'γ^+' 'γ+' %obs: 'γ^-' 'γ-' %obs: 'Γ_{eq}' 'Γeq' %obs: 'A.m!n.A' |A(m[1]), A(n[1])| %obs: 'A.m!.' |A(m[.])| %obs: 'A.n!.' |A(n[.])| %obs: 'Γ_{eq}/A_t' 'Γeq' / 'A0' %plot: 'A0' %mod: alarm 1.0 ([T] > 100) do $SNAPSHOT ; repeat [true] %mod: [T] > 1100 do $STOP ;
Stdout:
Parsing model.ka... done + simulation parameters + Sanity checks + Compiling... + Building initial simulation conditions... -variable declarations -rules -interventions -observables -update_domain construction 4 (sub)observables 0 navigation steps -initial conditions + Self seeding... + Building initial state (1 agents) Done + Command line to rerun is: 'KaSim' '-i' 'model.ka' '-var' 'scale' '1e-4' '-d' '-4' -seed 83065570 2126.00 time units in 0 events
What is keeping the simulation alive? It got to a time that was greater than 1100, and yet it didn't trigger the $STOP perturbation...
$STOP
The following model, with extreme parameters, produces a "simulation" that has zero activity, where all rules are dead, where there is nothing to do, and yet the simulation will never end.
Invokation:
KaSim -i model.ka -var scale 1e-4
Model:
Stdout:
What is keeping the simulation alive? It got to a time that was greater than 1100, and yet it didn't trigger the
$STOP
perturbation...