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KarchinLab / 2020plus

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
http://2020plus.readthedocs.org
Apache License 2.0
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Is grch38 supported? #16

Open a00101 opened 4 years ago

a00101 commented 4 years ago

Dear Karchin I have maf file from aligning grch38 ver. Can I get a hg38 'snvboxgene.bed' from you?

Thanks.

ctokheim commented 4 years ago

Currently, 20/20+ does not have pre-made data files for hg38. One work around could be to liftover the variant calls from hg38 coordinates to hg19 coordinates. Then you could use the already existing data files.