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KarchinLab / 2020plus

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
http://2020plus.readthedocs.org
Apache License 2.0
49 stars 17 forks source link

Regarding input file #6

Closed sigven closed 5 years ago

sigven commented 5 years ago

Hi,

I noticed that variants on chrX and chrY are labeled chr23 and chr24 in the example input file (bladder.txt). Is this recommended practice for a user dataset?

regards, Sigve

ctokheim commented 5 years ago

I recommend referring to them as chromosomes "X" and "Y" in the input.

sigven commented 5 years ago

Thanks:)