skanwal
commented
1 month ago Hello - we are facing the same issue as well. Any ideas how to fix/workaround it?
Open tanayb001 opened 6 months ago
skanwal
commented
1 month ago Hello - we are facing the same issue as well. Any ideas how to fix/workaround it?
Hi
While building intogen with make it is not finding HotMAPS mupit_modbase.sql.gz file. This file is not even present in karchinlab website or even in HotMAPS GitHub page. Please let me how to build Intogen in this case. My command is below:
(intogenbuild) iit@lab4:~/intogen-plus/build$ make Downloading bgdata datasets bgdata get datasets/genomereference/hg19 . . . python datasets/deconstructsigs/cosmic2exome.py datasets/deconstructsigs/signatures.cosmic.genome.tsv ../datasets/signature/cds.counts.gz ../datasets/signature/wg.counts.gz ../datasets/deconstructsigs/signatures.cosmic.exome.tsv mkdir ../datasets/hotmaps wget http://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz -O ../datasets/hotmaps/mupit_database.db.mysql.gz --2024-03-08 10:21:05-- http://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz Resolving karchinlab.org (karchinlab.org)... 162.129.223.26 Connecting to karchinlab.org (karchinlab.org)|162.129.223.26|:80... connected. HTTP request sent, awaiting response... 302 Found Location: https://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz [following] --2024-03-08 10:21:06-- https://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz Connecting to karchinlab.org (karchinlab.org)|162.129.223.26|:443... connected. HTTP request sent, awaiting response... 404 Not Found 2024-03-08 10:21:08 ERROR 404: Not Found.
make: *** [datasets/hotmaps/hotmaps.mk:15: ../datasets/hotmaps/mupit_database.db] Error 8 (intogenbuild) iit@lab4:~/intogen-plus/build$
Please let me know where to find this file.
Regards,
Tanay