open cravat doesn't work anymore

[jkobject]

I am trying to run open cravat and install base modules but it fails. steep to reproduce: sudo docker run -it karchinlab/opencravat bash then oc module install-base

error:

Traceback (most recent call last):
  File "/usr/local/bin/oc", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.6/site-packages/cravat/oc.py", line 220, in main
    args.func(args)
  File "/usr/local/lib/python3.6/site-packages/cravat/cravat_admin.py", line 413, in install_base
    install_modules(args)
  File "/usr/local/lib/python3.6/site-packages/cravat/cravat_admin.py", line 260, in install_modules
    matching_names = au.search_remote(*args.modules)
  File "/usr/local/lib/python3.6/site-packages/cravat/admin_util.py", line 1495, in search_remote
    for module_name in list_remote():
  File "/usr/local/lib/python3.6/site-packages/cravat/admin_util.py", line 1250, in list_remote
    mic.update_remote(force=force)
  File "/usr/local/lib/python3.6/site-packages/cravat/admin_util.py", line 291, in update_remote
    self.remote.pop("hgvs", None)  # deprecate hgvs annotator
AttributeError: 'str' object has no attribute 'pop'

[RachelKarchin]

Apologies. The compute center where our servers are located has shut down for maintenance from April 11 - April 15. All our servers are offline during this window. Please follow open-cravat twitter for updates.

On Mon, Apr 11, 2022 at 4:56 PM Jérémie Kalfon @.***> wrote:

I am trying to run open cravat and install base modules but it fails. steep to reproduce: sudo docker run -it karchinlab/opencravat bash then oc module install-base

error:

Traceback (most recent call last): File "/usr/local/bin/oc", line 8, in sys.exit(main()) File "/usr/local/lib/python3.6/site-packages/cravat/oc.py", line 220, in main args.func(args) File "/usr/local/lib/python3.6/site-packages/cravat/cravat_admin.py", line 413, in install_base install_modules(args) File "/usr/local/lib/python3.6/site-packages/cravat/cravat_admin.py", line 260, in install_modules matching_names = au.search_remote(*args.modules) File "/usr/local/lib/python3.6/site-packages/cravat/admin_util.py", line 1495, in search_remote for module_name in list_remote(): File "/usr/local/lib/python3.6/site-packages/cravat/admin_util.py", line 1250, in list_remote mic.update_remote(force=force) File "/usr/local/lib/python3.6/site-packages/cravat/admin_util.py", line 291, in update_remote self.remote.pop("hgvs", None) # deprecate hgvs annotator AttributeError: 'str' object has no attribute 'pop'

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-- Rachel Karchin, Ph.D. Professor of Biomedical Engineering, Oncology and Computer Science Co-Director Biomedical Engineering PhD Program Institute for Computational Medicine Johns Hopkins University 217A Hackerman Hall. 3400 N. Charles St. Baltimore, MD 21218

[jkobject]

no worries thanks!