KarchinLab / open-cravat

A modular annotation tool for genomic variants
MIT License
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Result viewer problems #127

Closed janetj1968 closed 1 year ago

janetj1968 commented 1 year ago

Hi- I am using the Windows version.

My Open Cravat had been working (jobs ran and stored successfully), but now when I go into the result viewer, the table no longer displays. Basically everything looks blank besides the logo, layout tab and on the right, the fields view table, ?, email and save to disc icons.

I have trying uninstalling and reinstalling, but no change.

Thanks for your help.

kmoad commented 1 year ago

Hi, thanks for the report. A few questions to help us track this down.

1) What version of oc are you using? Version number is in the top right of the submit page. 2) Where is the job database? In the submit page, click on the row for the job you want. It will open job details. What is the "Job Directory". 3) When you open the job are there any errors in the browser console? Open the job, then press the ctrl-shift-j. There will be some text that shows up. We're interested in what anything in red says.

janetj1968 commented 1 year ago

Thank you for taking the time to write! I am using version 2.2.7

The job database is in e:\jobs

There don't appear to be any errors, but its possibly looking like that isn't loading correctly either. I am attaching screenshots.

It just popped up that there is an update available. Should I just try that to see if it goes away? Jan

On Tue, Nov 22, 2022 at 9:59 AM Kyle Moad @.***> wrote:

Hi, thanks for the report. A few questions to help us track this down.

  1. What version of oc are you using? Version number is in the top right of the submit page.
  2. Where is the job database? In the submit page, click on the row for the job you want. It will open job details. What is the "Job Directory".
  3. When you open the job are there any errors in the browser console? Open the job, then press the ctrl-shift-j. There will be some text that shows up. We're interested in what anything in red says.

— Reply to this email directly, view it on GitHub https://github.com/KarchinLab/open-cravat/issues/127#issuecomment-1323811858, or unsubscribe https://github.com/notifications/unsubscribe-auth/AVBLQDDL3YBVGWBWAF6ENP3WJTNUNANCNFSM6AAAAAASG63AFU . You are receiving this because you authored the thread.Message ID: @.***>

janetj1968 commented 1 year ago

To me, its almost looking like the reporting structure (wherever its saved) isn't calling or that its corrupted. But it doesnt appear that re-installing is looking to make sure that it re-writes it.

Thanks again for your help.

On Tue, Nov 22, 2022 at 9:59 AM Kyle Moad @.***> wrote:

Hi, thanks for the report. A few questions to help us track this down.

  1. What version of oc are you using? Version number is in the top right of the submit page.
  2. Where is the job database? In the submit page, click on the row for the job you want. It will open job details. What is the "Job Directory".
  3. When you open the job are there any errors in the browser console? Open the job, then press the ctrl-shift-j. There will be some text that shows up. We're interested in what anything in red says.

— Reply to this email directly, view it on GitHub https://github.com/KarchinLab/open-cravat/issues/127#issuecomment-1323811858, or unsubscribe https://github.com/notifications/unsubscribe-auth/AVBLQDDL3YBVGWBWAF6ENP3WJTNUNANCNFSM6AAAAAASG63AFU . You are receiving this because you authored the thread.Message ID: @.***>

janetj1968 commented 1 year ago

I just wanted to let you know that your latest update fixed the issue...its working again! I appreciate you so much! Jan

On Tue, Nov 22, 2022 at 10:26 AM Janet Fix @.***> wrote:

Thank you for taking the time to write! I am using version 2.2.7

The job database is in e:\jobs

There don't appear to be any errors, but its possibly looking like that isn't loading correctly either. I am attaching screenshots.

It just popped up that there is an update available. Should I just try that to see if it goes away? Jan

On Tue, Nov 22, 2022 at 9:59 AM Kyle Moad @.***> wrote:

Hi, thanks for the report. A few questions to help us track this down.

  1. What version of oc are you using? Version number is in the top right of the submit page.
  2. Where is the job database? In the submit page, click on the row for the job you want. It will open job details. What is the "Job Directory".
  3. When you open the job are there any errors in the browser console? Open the job, then press the ctrl-shift-j. There will be some text that shows up. We're interested in what anything in red says.

— Reply to this email directly, view it on GitHub https://github.com/KarchinLab/open-cravat/issues/127#issuecomment-1323811858, or unsubscribe https://github.com/notifications/unsubscribe-auth/AVBLQDDL3YBVGWBWAF6ENP3WJTNUNANCNFSM6AAAAAASG63AFU . You are receiving this because you authored the thread.Message ID: @.***>