KarchinLab / open-cravat

A modular annotation tool for genomic variants
MIT License
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add values in 'Total reads' column #129

Closed lmanchon closed 1 year ago

lmanchon commented 1 year ago

--Hi, is there a parameter to change to add all the Total reads per sample even if the sample does not contain the mutation ? For example i submitted 5 samples and in Total reads column i have only one value and not five. thank you--

kmoad commented 1 year ago

Unfortunately, we don't have that parameter. OpenCRAVAT doesn't report total reads for samples with the reference allele. We'll consider changing this in future releases.