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KarchinLab / open-cravat

A modular annotation tool for genomic variants
MIT License
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missing info in output file #133

Closed katelynmullen closed 1 year ago

katelynmullen commented 1 year ago

Hi there! Could someone please add a variant end position columns to the output files? Right now, the results only contain "base__pos" and "original_input__pos", which is problematic for looking at FSDs, where VCFs only use the end position. Thanks!

kmoad commented 1 year ago

We can add that.

kmoad commented 1 year ago

End position has been added in oc 2.4.1 and mapper 1.1.0

https://github.com/KarchinLab/open-cravat/commit/da98183d4f3986b0a257fa8eed6cdcb13888f536 https://github.com/KarchinLab/open-cravat-modules-karchinlab/commit/97f3ceddcd8956709cbb39350ae8bb46260da47b