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KarchinLab / open-cravat

A modular annotation tool for genomic variants
MIT License
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Invalid module: hg38 #158

Closed tkmamidi closed 1 year ago

tkmamidi commented 1 year ago

I've installed openCravat on a server using pip and installed all desired modules. I copied annotators to a desired location and changed the config using oc config md data/. When I test the command oc config md to see where modules are currently stored, it shows the correct location. However, when I run an example, it couldn't find the modules for some reason and throws the error Invalid module: hg38.

Am I missing something?

Please help!

tkmamidi commented 1 year ago

I resolved it myself. Looks like it couldn't find the annotators directory under data/. I changed it to data/modules since all the annotators are in modules directory. It works now!

Sorry and thanks!