Closed tkmamidi closed 6 months ago
I think this is an issue with the system not being able to find the config file. Nextflow and other workflow engines can be strange with how they store that kind of data. Can you share what the nextflow wrapper configuration is? The opencravat docker container will look for config files in /mnt/config
in the container.
Looks like it didn't find the environment file that installs OpenCRAVAT. It is working now!
I'm trying to run openCravat using nextflow and a lot of jobs in our HPC are failing with this error. However, some jobs are working fine. I'm not sure what is happening. They're all using the same conda environment where openCravat 2.4.1 is installed.
Please help!