trouble to install system module

[bingfang]

After using openCravat for a few years, it broke, I tried uninstalled and reinstall with pip. Following the instruction. I tried to install missing system module and got the following error message. I tried 2.29 and 2.4.2 versions.

OpenCRAVAT is served at localhost:8080 (To quit: Press Ctrl-C or Ctrl-Break if run on a Terminal or Windows, or click "Cancel" and then "Quit" if run through OpenCRAVAT app on Mac OS) Traceback (most recent call last): File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/connectionpool.py", line 715, in urlopen httplib_response = self._make_request( ^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/connectionpool.py", line 404, in _make_request self._validate_conn(conn) File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/connectionpool.py", line 1058, in _validate_conn conn.connect() File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/connection.py", line 419, in connect self.sock = ssl_wrapsocket( ^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/util/ssl.py", line 449, in ssl_wrap_socket ssl_sock = _ssl_wrap_socketimpl( ^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/util/ssl.py", line 493, in _ssl_wrap_socket_impl return ssl_context.wrap_socket(sock, server_hostname=server_hostname) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/ssl.py", line 517, in wrap_socket return self.sslsocket_class._create( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/ssl.py", line 1108, in _create self.do_handshake() File "/Users/xubr/anaconda3/lib/python3.11/ssl.py", line 1379, in do_handshake self._sslobj.do_handshake() ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/Users/xubr/anaconda3/lib/python3.11/site-packages/requests/adapters.py", line 486, in send resp = conn.urlopen( ^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/connectionpool.py", line 799, in urlopen retries = retries.increment( ^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/urllib3/util/retry.py", line 592, in increment raise MaxRetryError(_pool, url, error or ResponseError(cause)) urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='store.opencravat.org', port=443): Max retries exceeded with url: /manifest-2.4.2.yml (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)')))

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/Users/xubr/anaconda3/lib/python3.11/site-packages/cravat/webstore/webstore.py", line 108, in get_remote_manifest content['data'] = au.get_remote_manifest() ^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/cravat/admin_util.py", line 837, in get_remote_manifest mic.update_remote() File "/Users/xubr/anaconda3/lib/python3.11/site-packages/cravat/admin_util.py", line 281, in update_remote manifest_str = su.get_file_to_string(self._remote_url) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/cravat/store_utils.py", line 196, in get_file_to_string r = requests.get(url, timeout=(3, None)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/requests/api.py", line 73, in get return request("get", url, params=params, kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/requests/api.py", line 59, in request return session.request(method=method, url=url, kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/requests/sessions.py", line 589, in request resp = self.send(prep, send_kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/requests/sessions.py", line 703, in send r = adapter.send(request, kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/xubr/anaconda3/lib/python3.11/site-packages/requests/adapters.py", line 517, in send raise SSLError(e, request=request) requests.exceptions.SSLError: HTTPSConnectionPool(host='store.opencravat.org', port=443): Max retries exceeded with url: /manifest-2.4.2.yml (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self-signed certificate in certificate chain (_ssl.c:1006)')))

[bingfang]

The installation didn't work when I used the NCI network. But when I installed the system module in a net work without proxy server, it worked.

[kmoad]

We'll have to look into if it's possible to download modules with an http proxy. It may not be, but I'll leave this issue open for now.

[kmoad]

Closing the issue pending more requests for HTTP proxy support.