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KarchinLab / open-cravat

A modular annotation tool for genomic variants
MIT License
110 stars 27 forks source link

feat/hgvs converter: Add supporting features for HGVS converter #232

Closed skanderson closed 2 months ago

skanderson commented 3 months ago

Small changes to BaseConverter and MasterCravatConverter in order to pass the converter's yml config to the CravatConverter object, and to set the input_assembly of the CravatConverter. This will allow converters (specifically the HGVSConverter) to access configurations of APIs or other necessities, and to check on a per-line basis that the input variant is on the correct assembly.

skanderson commented 3 months ago

This should be released together with: